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Introduction
The general idea that emerged from the experiments, made in our
laboratory, was that Echinodermata, as exemplifed, by sea star Aste-
rias rubens (Asterids)and by Ophiocomina nigra (Ophuirids), posses-
sed an immune system, able to mount cellular and humoral-specifc
responses. After stimulation with a foreign antigen:the horse-radish
peroxydase(HRP).
1,2
Then,these echinodermata produced a primitive
antibody, correlated to an Igkappa gene
3–5
to a Fab gene,
6
a Fc receptor
gene.
7
But a question desserves to be put: did the ancestral Echino-
dermata, Antedon bifda, (Crinoïd) possess such genes? It is why, in
a frst time, we look for IgKappa gene, Fab gene, Fc receptor gene in
this crinoïd by the mean of genomic studies.
Materials and methods
a. Animals: Antedon bifda was obtained at the station « Of Bio-
logie Marine of Roscoff » France.
b. Obtention of crinoïd mRNA: Digestive coeca were excised
from the A. bifda body. A. bifda mRNA was obtained from
Uptizol (Interchim). Quality control was operated.
c. Sequencing: Sequencing was made on Illumina Next Seq 500
with paired-end : 2. 75 bp
Transcriptome was assembled from RNA-Seq fastq fles using Tri-
nity v2.1.1 (
8
with default parameters. A BLAST database was created
with the assembled transcripts using makeblastdb application from
ncbi-blast+ (v2.2.31+). The sequences of transcripts of interest were
then blasted against this database using blastn application from ncbi-
-blast+
9
with parameter word_size 7.
d. Results: The Table 1 which is following summarizes the found
Antedon bifda transcriptomes of Igkappa gene and Fc receptor
gene of IgA (FCAR) of IgE (Fcer2a) we met in Homo sapiens
and in Mus musculus: The Antedon bifda IgK transcriptome
sequence is the one:
>TRINITY_DN9178_c0_g1_i2 (Igk):
5’ AGCGAATGAAAAAGAAGAACCGGCCAAA -
AAAAGTACTTCTACCAAAGAAGCGAATGAAAA
AGAAGAACCGGCCAAAAAAAGTACTTCTAC -
CAAAGAAGAAACTGAAATAGAAGAACTAAC
CGAAACAAGTATTTCTACAAAATCAGTTTC -
TGCCAGTGATATATTCCTTGGTACAACTTT
CACACTGGAGATGGGATTCTGCGTAGGACC -
TGAACACAAACCGTTTACAGGAGATTTCGA
CGGTGACGGTAATGAAGATCTTCTGTTTCA -
CAATTCAAAGACAGGCTCGAAAAAGATATA
CTATGCAAGTTGTGACGGCTCTTTTAATGG -
TGATAGGTCGTGGAGAAGAGAGATGAATTT
TTGCTACGTAAGTGGATATGATCTATACAT -
TGGTGATTTCAACGGCGATGGTCGATCCGA
TATGCTGTGTCATCGTCCTCAGTATGGTCA -
GATTTGGGTTGTGTTGGCGCAACCTGGGGG
TGTATTCACTGCTAACCCGTGGTCGTATAG -
TCCCAATTGGTGCAAGGCCACCACTGATAA
AGTATATATTGGAGACTTCAACGCAGACGG -
TCGGGATGATATTCTTTGCCACACACAAAG
TTCGGGTTACATTGCAATATATTATGCATTA -
TACACTGGTTATTTTTCTACCTCTACAAC
ATATCGCTTTACACGAAGTATGAGTTGGTG -
CAGAGGTACATATCAAAGAGTGTATACTGG
AGATTTCAACGGAGACCGAAGGGTTGATA -
TGCTCTGCCACGACTACTCATCTGGCTACAT
ATATGTAGCAGTAGCCACAGCGACTGGTG -
GATTCACCTCTGCCACATGGAGCAGAAGTAT
GGGCTGGTGCAAGCATTCGAACTCTAAGC -
TCAGCATTGGAGATTTCAATAAAGATAACCG
CGACGACATCATGTGCAGCGACACAAATG -
GTCCTTACTGGATAGCATTCTCTCTGTACAA
CGGTTCGTTTTCATCTAAAAGCTGGACCCG -
TAAACAAAACTGGTGTACATCTGGCAATGA
J Appl Biotechnol Bioeng. 2018;5(5):303‒304. 303
© 2018 Leclerc et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which
permits unrestricted use, distribution, and build upon your work non-commercially.
Evidence of immune genes in the crinoïd: Antedon
bifda evidence of A.bifda Igkappa gene and a FC
receptor one
Volume 5 Issue 5 - 2018
Michel Leclerc,
1
Franck Letourneur,
2
Dominique Davoult,
3
Ariane Jolly,
4
Pierre de
la Grange
4
1
556 rue Isabelle Romée, France
2
INSERM, Plate-forme génomique,Institut Cochin, France
3
Université Pierre et Marie Curie, station biologique de Roscoff,
France
4
Genosplice, France
Correspondence: Michel Leclerc, 556 rue Isabelle Romée,
45640 Sandillon, France, Email mleclerc45@gmail.com
Received: July 08, 2018 | Published: October 04, 2018
Abstract
Immuno-genomics studies realized in Echinodermata (Invertebrates) were surprising.
3 classes out of 5 Echinodermata presented an IGKappa gene and a Fc receptor gene.
It was, first demonstrated, in Asterids and Ophuirids. It was, secondly clearly shown,
in the ancestral Crinoïd: Antedon bifida
Keywords: invertebrates, echinodermata, crinoïds, igkappa gene, fc gene, A. bifida
Journal of Applied Biotechnology & Bioengineering
Research Article
Open Access