38 Int. J. Bioinformatics Research and Applications, Vol. 17, No. 1, 2021
Copyright © 2021 Inderscience Enterprises Ltd.
A hybrid method for differentially expressed genes
identification and ranking from RNA-Seq data
Mohammad Samir Farooqi*
Centre for Agricultural Bioinformatics,
Indian Agricultural Statistics Research Institute,
Library Avenue, Pusa,
New Delhi, 110012, Indıa
Email: samirfarooqi8@gmail.com
*Corresponding author
Devendra Kumar
Department of Statistics,
Central University Haryana,
Jant-Pali, Mahendergarh District, Pali,
Haryana, 123031, Indıa
Email: devendrastats@gmail.com
Dwijesh Chandra Mishra and Anil Rai
Centre for Agricultural Bioinformatics,
Indian Agricultural Statistics Research Institute,
Library Avenue, Pusa,
New Delhi, 110012, Indıa
Email: dwij.mishra@gmail.com
Email: anilrai64@gmail.com
Niraj Kumar Singh
Department of Statistics,
AIAS, Amity University,
Noida, UP, 201313, India
Email: nksingh@amity.edu
Abstract: RNA-Seq has gained immense popularity and emerged as a potential
high-throughput platform for identification of differentially expressed (DE)
genes. In order to estimate the nature of differential genes, it is important to
find statistical distributional property of the data. In the present study we
propose a new hybrid model (NBPFCROS) based on parametric and
non-parametric statistic for the identification of DE genes. The NBP model
based on Compound mixture of Poisson–gamma distribution is used as a
parametric statistic and Fold change value derived using fold change rank
ordering statistics (FCROS) algorithm is used as non-parametric statistic,
we used a gene significance score pi-value by combining expression fold
change (f value) and statistical significance (p-value). The performance of