Package ‘LDheatmap’ October 8, 2020 Version 1.0-4 Date 2020-10-03 Title Graphical Display of Pairwise Linkage Disequilibria Between SNPs Maintainer Brad McNeney <mcneney@sfu.ca> Depends R (>= 4.0) Imports grid, genetics, snpStats, Rcpp Suggests rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2, vcfR Description Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between single nucleotide polymorphisms (SNPs). Users may optionally include the physical locations or genetic map distances of each SNP on the plot. The methods are described in Shin et al. (2006) <doi:10.18637/jss.v016.c03>. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>. License GPL-3 URL https://sfustatgen.github.io/LDheatmap/ Repository CRAN Date/Publication 2020-10-08 10:00:02 UTC RoxygenNote 7.1.0 LinkingTo Rcpp NeedsCompilation yes Author Ji-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Youwei Yan [ctb], Jinko Graham [aut] 1