A molecular zoom into soil Humeome by a direct sequential chemical
fractionation of soil
Marios Drosos ⁎, Antonio Nebbioso, Pierluigi Mazzei, Giovanni Vinci, Riccardo Spaccini, Alessandro Piccolo ⁎
Centro Interdipartimentale di Ricerca sulla Risonanza Magnetica Nucleare per l'Ambiente, l'Agroalimentare ed i Nuovi Materiali (CERMANU), Università di Napoli “Federico II”, via Università 100,
80055 Portici, Italy
HIGHLIGHTS
• Soil Humeome was for the first time di-
rectly fractionated from soil.
• 235% more carbon extracted by
Humeomics than traditional alkaline
extraction.
• Separation of soil Humeome unraveled
soil organominerals arrangement.
• HR-ESI-Orbitrap-MS revealed humic
molecules covalently bound to Fe and
AlSi.
• 66% of unextractable carbon by alkaline
solution was solubilised by Humeomics.
GRAPHICAL ABSTRACT
abstract article info
Article history:
Received 23 December 2016
Received in revised form 7 February 2017
Accepted 7 February 2017
Available online xxxx
Editor: Jay Gan
A Humeomics sequential chemical fractionation coupled to advanced analytical identification was applied direct-
ly to soil for the first time. Humeomics extracted ~ 235% more soil organic carbon (SOC) than by the total alkaline
extraction traditionally employed to solubilise soil humic molecules (soil Humeome). Seven fractions of either
hydro- or organo-soluble components and a final unextractable humic residue were separated from soil. These
materials enabled an unprecedented structural identification of solubilised heterogeneous humic molecules by
combining NMR, GC–MS, and ESI-Orbitrap-MS. Identified molecules and their relative abundance were used to
build up structure-based van Krevelen plots to show the specific contribution of each fraction to SOC. The step-
wise isolation of mostly hydrophobic and unsaturated molecules of progressive structural complexity suggests
that humic suprastructures in soil are arranged in multi-molecular layers. These comprised molecules either
hydrophobically adsorbed on soil aluminosilicate surfaces in less stable fractions, or covalently bound in amor-
phous organo-iron complexes in more recalcitrant fractions. Moreover, most lipid molecules of the soil
Humeome appeared to derive from plant polyesters rather than bacterial metabolism. An advanced understand-
ing of soil humic molecular composition by Humeomics may enable control of the bio-organic dynamics and
reactivity in soil.
© 2017 Elsevier B.V. All rights reserved.
Keywords:
SOM
Humic molecules
Humeomics
Structural identification
Carbon stabilization
Organomineral complexes
1. Introduction
Soil contains the largest terrestrial pool of organic carbon (OC), with
global estimates ranging from 1115 to 2200 Pg (Batjes, 2014). Recent
evaluations of SOC dynamics have shown that 20–40% of carbon stored
as organic matter (OM) in the upper soil layers has turnover times
Science of the Total Environment xxx (2017) xxx–xxx
⁎ Corresponding authors.
E-mail addresses: drosos.marios@gmail.com (M. Drosos), antonio.nebbioso@unina.it
(A. Nebbioso), pierluigi.mazzei@unina.it (P. Mazzei), giovanni.vinci@unina.it (G. Vinci),
riccardo.spaccini@unina.it (R. Spaccini), alessandro.piccolo@unina.it (A. Piccolo).
STOTEN-21996; No of Pages 10
http://dx.doi.org/10.1016/j.scitotenv.2017.02.059
0048-9697/© 2017 Elsevier B.V. All rights reserved.
Contents lists available at ScienceDirect
Science of the Total Environment
journal homepage: www.elsevier.com/locate/scitotenv
Please cite this article as: Drosos, M., et al., A molecular zoom into soil Humeome by a direct sequential chemical fractionation of soil, Sci Total
Environ (2017), http://dx.doi.org/10.1016/j.scitotenv.2017.02.059