Original Article
PREDICTION OF LOG P AND SPECTRUM OF QUERCETINE, GLUCOSAMINE, AND
ANDROGRAPHOLIDE AND ITS CORRELATION WITH LABORATORY ANALYSIS
SANDRA MEGANTARA
*
, MUTAKIN, JUTTI LEVITA
Department of Pharmaceutical Analysis and Medicinal Chemistry, Faculty of Pharmacy, Universitas Padjadjaran
Email: smegantara@gmail.com
Received: 19 Sep 2015 Revised and Accepted: 09 Sep 2016
ABSTRACT
Objective: This study was aimed to confirm the result of computational prediction of log P and spectrum (ultraviolet-visible,
1
H-NMR,
13
Methods: Quercetine, glucosamine and andrographolide, were downloaded from ChemSpider and were geometry optimised. Log P and spectrum
were calculated and predicted and the data obtained were compared with laboratory results. The correlation was calculated by employing mean
absolute deviation (MAD), mean square error (MSE), mean forecast error (MFE), and mean absolute percentage error (MAPE) parameters.
C-NMR) of
quercetin, glucosamine and andrographolide with laboratory analysis.
Results: The smallest energy value of geometry optimisation was provided by ab initio method. Log P prediction showed good accuracy, with r-value 0.995
and p-value 0.05 respectively. The error parameters were: MAD 0.19; MSE 0.06; MFE 0.16, and MAPE 8.62%, respectively. Prediction of λ maximum by ab
initio, semiempirical, and molecular mechanics were respectively: MAD 2.67, 6.67, and 28.67; MSE 8.67, 45.33, and 830; MFE 2.67, 6.67, and 28.67; and MAPE
1.10%, 2.79%, and 11.99%; r-value 0.997, 0.997, and 0.979; and p-value 0.044, 0.043, and 0.129.
1
H-NMR and
13
Conclusion: There is a positive correlation between computational ab initio calculation method with experimental results in predicting log P and
spectrum of quercetine, glucosamine, and andrographolide.
C-NMR spectra prediction were: MAD 0.73
and 1.58; MSE 1.15 and 7.41; MFE 0.27 and 0.69; MAPE 18.35% and 2.68%; r-value 0.942 and 0.986; and p-value 0.001 and 0.001.
Keywords: Ab initio, Lipophilicity, Molecular mechanics, Semiempirical, Ultraviolet-visible,
1
H-NMR,
13
© 2016 The Authors. Published by Innovare Academic Sciences Pvt Ltd. This is an open access article under the CC BY license (
C-NMR
http://creativecommons. org/licenses/by/4. 0/)
DOI: http://dx.doi.org/10.22159/ijpps.2016v8i11.9101
INTRODUCTION
The rapid development of computational techniques finds its way to
be very helpful for related sciences, e. g. for chemistry to predict
physicochemical properties of compounds. According to quantum
chemistry, a molecular system is described by a wavefunction which
can be found by solving the Schrődinger equation:
Ĥ Ψ = Ε Ψ
In the end, this equation will describe the positions of the nuclei and
electrons in the system. Quantum chemistry should be applied for
‘small system’, which can be treated at a very high level, when
electronic properties are sought (electric moments, polarizabilities,
shielding constants in NMR, etc) [1].
Energy is one of the most important parameters in science. All
computational chemistry techniques define energy such that the
system with the lowest energy is the most stable. In formulating a
mathematical representation of molecules, it is necessary to define a
reference system that is defined as having zero energy. This zero of
energy for ab initio or density functional theory (DFT) corresponds
to having all nuclei and electrons at an infinite distance from one
another. Most empirical methods use a valence energy that
corresponds to having the valence electrons removed and the
resulting ions at an infinite distance. Most molecular mechanics
methods use stainless molecule as zero energy [2].
In this work, we confirmed the accuracy of computational technique
prediction on physicochemical properties (log P) and spectrum
(ultraviolet-visible,
1
H-NMR,
13
C-NMR) of quercetin (fig. 1a),
glucosamine (fig. 1b), and andrographolide (fig. 1c) by comparing it
to laboratory analysis. Therefore, computational calculations could
be used to simplify and shorten the long process of analytical works
in the laboratory. These three compounds were selected to
represent molecule with aromatic and carbonyl chromophores
which have π π* and n π* electronic transitions (quercetine), a
molecule which lacks of the chromophore (glucosamine), and
molecule without aromatic chromophore (andrographolide). These
three compounds have been proven to show anti-inflammatory
activity in animals [3-8].
Fig. 1: Chemical structures of quercetine (a), glucosamine (b), PITC-glucosamine (c), and andrographolide (c)
International Journal of Pharmacy and Pharmaceutical Sciences
ISSN- 0975-1491 Vol 8, Issue 11, 2016