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International Journal of Engineering & Technology, 7 (4.37) (2018) 1-11
International Journal of Engineering & Technology
Website: www.sciencepubco.com/index.php/IJET
Research paper
New Finding in KRAS Mutated Structure Detected in Colorectal
Cancer CRC Tumors Causing Uncontrolled Cell Proliferation in
Iraqi Patients
Rehab Subhi Ramadhan
1*,
Rebah Najah Jabbar AL-Gafari
2
1
Department of Medical Biotechnology, College of Biotechnology, Al-Nahrain
University, Baghdad, Iraq
2
Biotechnology Research Center, Al-Nahrain University, Baghdad, Iraq
*Corresponding author E-mail: rebahalgafari@gmail.com
Abstract
A total 200 tumor samples were collected from patients suffering from colorectal CRC at Al-Amal hospital. Their ages ranged from 40 –
70 years old and distributed according to gender as 130 male and 70 female. We found that CRC was more common in male than female,
and more frequent in elderly persons especially in age group of 61 – 70 years old. From 12 specifically designed primers that were able
to amplify KRAS gene in those patients’ blood samples, only 2 gave a specific band when tumor sample was used. Molecular analysis of
the sequence obtained from those two primers showed the presence of 83 missense mutations in both of them, 20 in the first sequence
were associated with pathogenic effect on KRAS gene, 3 frame shift, and 3 insertions, while in the second sequence obtained from pri-
mer PK2 4 frame shift mutations, and 4 insertions were identified. The impact finding is that in both sequences, open reading frames
(ORFs) were developed that affected cell proliferation dramatically and produced truncated functionless proteins causing KRAS to cease
control over cell cycle.
Keywords: KRAS; Oncogene; colorectal cancer; pathogenetic mutation.
1. Introduction
Colorectal cancer (CRC) is the second leading cause of cancer-
related death. The development of CRC is a multistep process
characterized by accumulation of genetic alterations that have long
been considered to occur in a stepwise process (Russo et al., 2005.
Along the progression from normal colonic epithelial cells, small
adenoma, advanced adenoma, and finally to carcinoma, the KRAS
oncogene mutation has a role in a significant proportion of CRCs
Castagnola and Giaretti 2005. KRAS has been reported to be mu-
tated in about 30% of colorectal adenomas and 30% to 50% of
CRCs. The KRAS gene encodes a 21-kDa small protein that is
activated transiently as a response to extracellular stimuli or sig-
nals such as growth factors, cytokines, and hormones via cell sur-
face receptors. On its activation, the KRAS protein also is capable
of turning off the signaling pathway by catalyzing hydrolysis of
guanosine triphosphates (GTP) to guanosine diphosphates Down-
ward 2003. The most common KRAS mutations in codons 12 and
13 are activation mutations, leading to continuous activation of
downstream pathways. The most frequently observed types of
mutations in KRAS in all human cancers are G > A transition and
G > T transversion Haigis et al., 2008. Although the precise mo-
lecular and cellular mechanisms that constitute the oncogenic
effects of activating KRAS mutations remain incompletely under-
stood, in vitro and animal studies showed that KRAS regulated
genes involve cytokine signaling, cell adhesion, cell survival,
proliferation, apoptosis, and colon development Malumbres and
Barbacid, 2003. The RAS oncogene has a well-established role in
cell growth and regulation; and its protein product affects many
cellular functions including cell proliferation, apoptosis, migration,
fate specification, and differentiation. There are three known hu-
man isoforms, NRAS, HRAS, and KRAS. Over 90% of pancreatic
adenocarcinomas Almoguera , 1988 , 30%–50% of colorectal
cancers De Roock et al, 2008, 55% of thyroid cancers, 35% of
lung cancers, and 35% of rhabdomyosarcomas harbor mutated
RAS genes Kranenburg 2005. Although HRAS was historically
the most studied RAS gene, it is actually the isoform least mutated
in human cancers Baines, and Xu, D.; Der 2011. In fact, KRAS
mutations comprise 86% of all RAS mutations. Mutations in
KRAS occur with the greatest frequency in all human cancers
(21.6%), followed by NRAS (8.0%), and HRAS (3.3%). In recent
studies, a lethal genetic change was identified at exon 2 in KRAS
gene in Iraq. The study showed the accumulation of 22 pathogenic
SNPs which eventually led to CRC in these patients (Subhi et al.,
2018).
2. Materials and Methods
Collection of tissue Samples: Tissue samples were collected at
Al-Amal hospital from 200 patients after they diagnosed with
colorectal cancer using bio marker (CA19-9) and subjected to
tumor excision. Their ages ranged between (40-70) years as the
majority of individuals attending the hospital for treatment.
DNA extraction from blood: The gSYNC™ DNA Extraction Kit
from Geneaid (Taiwan) was used for this purpose as instructed by
the manufacturer. The extraction procedure mainly depends upon
spin column technique which gave DNA purity of 1.8-2 and con-
centration of 80-120 ng/sample. Primers used for DNA amplifica-