Machine learning prediction of the potential pesticide applicability of
three dihydroquinoline derivatives: Syntheses, crystal structures and
physical properties
Wesley F. Vaz
a, b
, Giulio D.C. D’Oliveira
c
, Caridad N. Perez
c
, Bruno J. Neves
c
,
Hamilton B. Napolitano
a, d, *
a
Universidade Estadual de Goi as, 75132-400, An apolis, GO, Brazil
b
Instituto Federal de Educaç~ ao, Ci^ encia e Tecnologia de Mato Grosso, 78455-000, Lucas do Rio Verde, MT, Brazil
c
Universidade Federal de Goi as, 74690-900, Goi^ ania, GO, Brazil
d
Centro Universit ario de An apolis, 75075-010, An apolis, GO, Brazil
article info
Article history:
Received 15 October 2019
Received in revised form
7 January 2020
Accepted 13 January 2020
Available online 22 January 2020
Keywords:
Machine learning model
Tobacco mosaic virus
Fusarium oxysporum
dihydroquinoline
Crystal structure
abstract
Increasingly machine learning processes have been applied in the search and development of com-
pounds that may have specific physicochemical properties to the desired application. This article de-
scribes how a machine learning model led us to the synthesis of three dihydroquinoline derivatives with
potential application as a pesticide. The synthesized compounds were predicted to be active against the
Tobacco mosaic virus (y 90%) and Fusarium oxysporum (y 78%). Regarding a correlation between the
pesticide activity and the molecular structure, the new dihydroquinoline derivatives were structurally
characterized using spectroscopic techniques and single crystal X-ray diffraction. They crystallized into
orthorhombic (I) and monoclinic (II and III) crystal systems with supramolecular arrangements main-
tained primarily by non-classical CeH/O hydrogen bonds, which form dimers and chains in their
molecular packaging. Frontier molecular orbitals and molecular electrostatic potential maps were un-
dertaken using density functional theory in order to study the electronic properties of the observed
molecular conformations. Finally, the developed approach is a useful tool on new pesticide investigation
when experimental toxicity data are not available.
© 2020 Elsevier B.V. All rights reserved.
1. Introduction
Pesticides include herbicides, insecticides, fungicides, fumi-
gants, and rodenticides and offer significant benefits in public
health and food production. Unlike most other significant chem-
icals, pesticides are designed to impact living systems [1]. As a
result, there is a worry regarding the environmental and human
consequences of extensive pesticide use [1 ,2]. Several harmful ef-
fects on the overuse of pesticides include (1) potential destruction
of biodiversity; (2) problems on environmental sustainability and
global stability [2]; and (3) potential contamination on food, water
and the environment [3]. Therefore, it is important to develop new
compounds less harmful to living systems and machine learning is
a powerful methodology regarding its wide use of molecular en-
gineering applied to design compounds with desired properties [4].
Machine learning models have long been employed for drug dis-
covery utilizing docking studies, virtual screening, molecule syn-
thesis, small molecule physicochemical properties, solubility and
beyond [5]. Moreover, machine learning methods have also been
used to discover solutions to environmental issues, such as
municipal solid waste management [6], soil/compost properties
with bioavailability and risk assessment [7], to model the
bioavailability of contaminants [8], and to obtain new antifungal
and antiviral agents in agriculture [9e12].
To propose new compounds with biological potential, we
developed a machine learning model from a training set of mole-
cules with known activity. In this case, was assumed that the po-
tential pesticide is associated with the chemical structure. The
obtained model shows that alpha-beta unsaturated systems, sul-
fonamide group, and the nitro group are frequently founded in
* Corresponding author. Universidade Estadual de Goi as, 75132-400, An apolis,
GO, Brazil.
E-mail address: hamilton@ueg.br (H.B. Napolitano).
Contents lists available at ScienceDirect
Journal of Molecular Structure
journal homepage: http://www.elsevier.com/locate/molstruc
https://doi.org/10.1016/j.molstruc.2020.127732
0022-2860/© 2020 Elsevier B.V. All rights reserved.
Journal of Molecular Structure 1206 (2020) 127732