2-Ethynylpyridine dimers: IR spectroscopic and computational study
Danijela Bakarić
a,
⁎, Jens Spanget-Larsen
b,
⁎
a
Division of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička 54, 10001 Zagreb, Croatia
b
Department of Science and Environment, Roskilde University, Universitetsvej 1, P.O. Box 260, DK-4000 Roskilde, Denmark
abstract article info
Article history:
Received 25 August 2017
Received in revised form 15 December 2017
Accepted 13 January 2018
Available online xxxx
2-ethynylpyridine (2-EP) presents a multifunctional system capable of participation in hydrogen-bonded com-
plexes utilizing hydrogen bond donating (`C \\ H, Aryl−H) and hydrogen bond accepting functions (N-atom,
C`C and pyridine π-systems). In this work, IR spectroscopy and theoretical calculations are used to study possi-
ble 2-EP dimer structures as well as their distribution in an inert solvent such as tetrachloroethene. Experimen-
tally, the `C \\ H stretching vibration of the 2-EP monomer absorbs close to 3300 cm
−1
, whereas a broad band
with maximum around 3215 cm
−1
emerges as the concentration rises, indicating the formation of hydrogen-
bonded complexes involving the `C \\ H moiety. The C`C stretching vibration of monomer 2-EP close to
2120 cm
−1
is, using derivative spectroscopy, resolved from the signals of the dimer complexes with maximum
around 2112 cm
−1
. Quantum chemical calculations using the B3LYP + D3 model with counterpoise correction
predict that the two most stable dimers are of the π-stacked variety, closely followed by dimers with intermolec-
ular `C \\ H⋯N hydrogen bonding; the predicted red shifts of the `C \\ H stretching wavenumbers due to hydro-
gen bonding are in the range 54–120 cm
−1
. No species with obvious hydrogen bonding involving the C`C or
pyridine π-systems as acceptors are predicted. Dimerization constant at 25 °C is estimated to be K
2
= 0.13 ±
0.01 mol
−1
dm
3
.
© 2018 Elsevier B.V. All rights reserved.
Keywords:
2-ethynylpyridine
Multifunctionality
Hydrogen bonding
IR spectroscopy
Quantum chemical calculations
1. Introduction
The simplest multifunctional molecule capable of forming weak hy-
drogen bonds employing both hydrogen bond donating and accepting
sites is ethynylbenzene (EB). With one hydrogen bond donating site
(`C \\ H) and two hydrogen bond accepting sites (C`C and phenyl π
systems), all of which are classified as rather weak, it can produce ver-
satile interaction patterns. The resulting one is often highly unpredict-
able and usually considered to be dictated by the distribution and
strength of the available hydrogen bonding centers of the another pro-
tagonist in a hydrogen-bonded complex [1–4]. In this context, the di-
merization of EB attracted considerable interest [4–6]. The
combination of IR–UV double resonance spectroscopy and high-level
ab initio calculations demonstrated that the most stable EB⋯EB dimer
is the one with an antiparallel π-stacked structure, i.e., the dimerization
is primarily driven by π⋯π dispersion interactions between phenyl
rings [5]. Furthermore, it is hypothesized to be the first π-stacked
dimer without heteroatoms.
The substitution of a particular C− or H–atom by a heteroatom in EB
induces a change in the hydrogen bonding interaction pattern. For in-
stance, the impact of H–atom substituents and their position on the
overall disturbance of the hydrogen bonds interplay is demonstrated
by the hydrogen-bonded complexes between fluoroethynylbenzenes
and alcohols [7], and between ethynylbenzonitrile and water [8]. The
impact of the replacement of a C–atom in the phenyl ring by a hetero-
atom on the dimer formation is not reported so far. In this respect, 2-
ethynylpyridine (2-EP) is an appropriate candidate. Unlike 3- and 4-
ethynylpyridines, 2-EP is liquid at room temperature [9] implying
that, as in EB case, it undergoes self-association but lacks higher order-
ing at standard conditions. In addition, the N–atom is electronegative
and is a stronger acceptor of the hydrogen bond than are the π systems
on EB. The ability of 2-EP to make hydrogen-bonded complexes with
compounds such as trimethyl phosphate and its analysis by vibrational
spectroscopies is already reported [10,11]. We thus expect that the
combination of IR spectroscopy and quantum chemical calculations is
a promising strategy in the study of the formation of 2-EP dimers.
In this work, the competition between different hydrogen bond do-
nating and hydrogen bond accepting centers and the resulting dimer
structures of 2-EP will be examined. IR spectroscopy is proven to be
an indispensable tool in the exploration of the hydrogen-bonded sys-
tems [12]. Even when weak hydrogen bonds are under study, it can dis-
tinguish the signatures that originate due to free and hydrogen-bonded
oscillators. As 2-EP can form multimers by employing simultaneously all
hydrogen bond donating and hydrogen bond accepting sites, it is of im-
portance to conduct the experiment in a concentration range in which
only monomers and dimers can be assumed to exist. This strategy en-
sures that the signals attributed to hydrogen-bonded oscillators are
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 195 (2018) 41–46
⁎ Corresponding authors.
E-mail addresses: dvojta@irb.hr (D. Bakarić), spanget@ruc.dk (J. Spanget-Larsen).
https://doi.org/10.1016/j.saa.2018.01.046
1386-1425/© 2018 Elsevier B.V. All rights reserved.
Contents lists available at ScienceDirect
Spectrochimica Acta Part A: Molecular and Biomolecular
Spectroscopy
journal homepage: www.elsevier.com/locate/saa