147| VOLUME 78 ISSUE 2 | NOVEMBER
Sequence Analysis of the Internal Transcribed Spacer (ITS)
Region of the Nuclear Ribosomal DNA (nrDNA), and trnL
Intron of Chloroplast DNA (cpDNA) of the Chrysochamela
(Fenzl) Boiss. (Brassicaceae) In Turkey
Emre SEVİNDİK
1*
and Mehmet Yavuz PAKSOY
2
1
Aydın Adnan Menderes University, Faculty of Agriculture, Department of Agricultural Biotechnology, South Campus,
Cakmar, Aydin, Turkey
2
Munzur University, Tunceli Vocational School, Department of Medical Services and Techniques, Medical
Documentation and Secretaryship Pr. Tunceli, Turkey
* Corresponding author: E.Sevindik e-mail: ph.d-emre@hotmail.com
RESEARCH ARTICLE
Abstract
Brassicaceae family is an important one since it includes many economic and significant industrial oilseeds,
spices, vegetables and some forage plants. In this study, sequences analysis among Chrysochamela (Brassicaceae)
species distributed in Turkey were conducted nrDNA ITS and cpDNA trnL intron sequences. Chrysochamela
species were collected and brought to the laboratory. ITS and trnL intron sequences were corrected with BioEdit
and FinchTV programs. As a result of the study, ITS nucleotide compound compositions were determined as
22.7% T, 29.1 C, 21.5% A and 26.7% G. The lowest distance was 0.000 and the highest distance was 0.037. The
phylogenetic tree obtained using the MEGA 6.0 program consists of two large groups. According to trnL intron
sequences 37.9% T, 18.4 C, 28.3% A and 15.5% G. Nucleotide compound compositions were determined. The
genetic distance between species was determined between 0.000 and 0.022. Maximum likelihood phylogenetic
tree consists of two large groups. As a result, phylogenetic analyzes using ITS and trnL intron sequences were
compatible with each other. It was also in past studies found to be supported by morphological, anatomical and
RAPD data.
Keywords: Chrysochamela; ITS; trnL intron.
INTRODUCTION
Turkey, the origin of a number of crop plants and many species of plant and / or
one of the centers of diversity (Balkaya and Karaagaç, 2006). Different ecological
conditions have enabled Turkey to have such a great genetic (Pinar et al., 2021).
The Brassicaceae comprises 49 tribes, 321 genera and 3660 species in the world
(Al-Shehbaz, 2012). This family, in Turkey, consists of 88 genera and 539 species
(Başer et al., 2018). This family includes many vegetable crops of the genera
Brassica L. and Raphanus, L. sources of spices (Eutrema R.Br. and Armoracia
Gaertn. Mey Et Schreb.) and vegetable oils (Brassica), ornamental plants
(Arabis,L., Hesperis L., Lobularia Desv. and Matthiola R.Br.), and model species in
experimental biology (for example, Arabidopsis thaliana (L) Heynhold) (Koch
and Marhold, 2012; Guo et al., 2017; Esmailbegi et al., 2018). The genus
Chrysochamela (Fenzl) Boiss., is one of the genus of Brassicaceae. In the flora of
Turkey, there are 3 species of Chrysochamela genus viz., (Chrysochamela elliptica
Received: 20 June 2021
Accepted: 14 September 2021
Published: 15 November 2021
DOI:
15835/buasvmcn-hort:2021.0006
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