~ 89 ~ Journal of Medicinal Plants Studies 2020; 8(4): 89-95 ISSN (E): 2320-3862 ISSN (P): 2394-0530 NAAS Rating: 3.53 www.plantsjournal.com JMPS 2020; 8(4): 89-95 © 2020 JMPS Received: 04-05-2020 Accepted: 06-06-2020 Khoshnur Jannat Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka, Bangladesh Anamul Hasan Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka, Bangladesh Rahat Al Mahamud Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka, Bangladesh Rownak Jahan Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka, Bangladesh Tohmina Afroze Bondhon Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka, Bangladesh Be-nazir Farzana Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka, Bangladesh Mohammed Rahmatullah Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka, Bangladesh Corresponding Author: Mohammed Rahmatullah Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka, Bangladesh In silico screening of Vigna radiata and Vigna mungo phytochemicals for their binding affinity to SARS-CoV-2 (COVID-19) main protease (3CL pro ) Khoshnur Jannat, Anamul Hasan, Rahat Al Mahamud, Rownak Jahan, Tohmina Afroze Bondhon, Be-nazir Farzana and Mohammed Rahmatullah Abstract The seeds of Vigna radiata (green gram) are a favorite dish in Bangladesh and India and also considered an important nutritional and medicinal food in Ayurveda. According to Ayurveda, the pulse can pacify kapha and pitta but can aggravate vata. The seeds of another pulse, Vigna mungo (black gram) are also widely consumed in India and Bangladesh, more so by the low income groups of population. According to Ayurveda, this pulse is good for pacifying vata. A new coronavirus infection COVID-19 or SARS- CoV-2 have become a pandemic and as of June 28, 2020, have infected 10,080,224 persons and caused 501,262 deaths throughout the world. The statistics for USA, India and Bangladesh are, respectively, 2,596,537 infections and 128,152 deaths, 529,577 infections and 16,103 deaths, and 133,978 infections and 1,695 deaths. The respective populations for these three countries are 328.2 million (2019 figure), 1.353 billion (2018 figure), and 161.4 million (2018 figure). Thus despite the higher poverty level and population density, India and Bangladesh have managed to keep COVID infection levels much lower than an advanced country like USA. Although there can be a number of factors behind low COVID levels in India and Bangladesh, dietary habits may be one of them. The two pulses are taken on a daily basis and more often more than one times per day in India and Bangladesh by all sections of the population. In silico screening of the major phytochemicals of the two pulses revealed that a number of phytochemicals present in the pulses have high binding affinities for the C-3 like main protease of COVID-19, which is vital for viral replication. Although a definite conclusion cannot be reached without doing anti-viral tests, it is plausible that inhibition of the protease by the phytochemicals present in the two pulses may contribute to the low incidences of COVID-19 infections in India and Bangladesh. Keywords: Vigna radiata, Vigna mungo, COVID-19, phytochemicals, in silico Introduction Human coronaviruses are associated with multiple forms of respiratory diseases including cold, pneumonia, and bronchitis [1] . Coronaviruses are so named because the viruses contain spike (S) protein on their surfaces resembling a corona. Seven known HCoVs have been identified so far, namely HCoV-229E, HCoV-NL63, HCoV-OC43, HCoV-HKU1, severe acute respiratory syndrome coronavirus (SARS-CoV), Middle East respiratory syndrome coronavirus (MERS-CoV), and SARS-CoV-2 or COVID-19, which emerged in December 2019 in Wuhan, China. Four HCoVs (HCoV-229E, HCoV-NL63, HCoV-OC43 and HCoV- HKU1) are common and globally circulated in the human population and contribute to approximately one-third of common cold infections in humans every year [2] , which usually does not get complicated and passes off in a week or so with mild symptoms of cough, cold and fever and easily dismissed as ‘viral flu’. Coronaviruses attach to specific receptors on the human cell through their spike (S) protein. For SARS-CoV and SARS-CoV-2, the receptor is the angiotensin-converting enzyme (ACE)- 2. Following receptor binding, nucleocapsid is released into the cytoplasm of the host cell [3] . The genome of SARS and SARS-CoV-2 encodes two large polyproteins, pp1a and 5 pp1ab. These polyproteins are cleaved and transformed in mature non-structural proteins (NSPs) by the two proteases 3CL pro (3C-like protease or chymotrypsin-like protease) and PL pro (Papain Like Protease) encoded by the open reading frame 1.