Pressure Effects on Enzyme-Catalyzed Quantum Tunneling Events
Arise from Protein-Specific Structural and Dynamic Changes
Sam Hay,*
,†,‡
Linus O. Johannissen,
†,§
Parvinder Hothi,
†,‡
Michael J. Sutcliffe,
†,§
and Nigel S. Scrutton*
,†,‡
†
Manchester Interdisciplinary Biocentre,
‡
Faculty of Life Sciences, and
§
School of Chemical Engineering and Analytical Sciences,
University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
* S Supporting Information
ABSTRACT: The rate and kinetic isotope effect (KIE) on proton
transfer during the aromatic amine dehydrogenase-catalyzed
reaction with phenylethylamine shows complex pressure and
temperature dependences. We are able to rationalize these effects
within an environmentally coupled tunneling model based on
constant pressure molecular dynamics (MD) simulations. As
pressure appears to act anisotropically on the enzyme,
perturbation of the reaction coordinate (donor -acceptor
compression) is, in this case, marginal. Therefore, while we have
previously demonstrated that pressure and temperature depend-
ences can be used to infer H-tunneling and the involvement of promoting vibrations, these effects should not be used in the
absence of atomistic insight, as they can vary greatly for different enzymes. We show that a pressure-dependent KIE is not a
definitive hallmark of quantum mechanical H-tunneling during an enzyme-catalyzed reaction and that pressure-independent KIEs
cannot be used to exclude tunneling contributions or a role for promoting vibrations in the enzyme-catalyzed reaction. We
conclude that coupling of MD calculations with experimental rate and KIE studies is required to provide atomistic understanding
of pressure effects in enzyme-catalyzed reactions.
■
INTRODUCTION
Kinetic isotope effects (KIEs) are a useful probe of reaction
mechanism, and inflated intrinsic KIEs remain the definitive
hallmark of quantum mechanical hydrogen tunneling in
enzymes.
1-3
The possibilities that tunneling during enzyme-
catalyzed reactions may be catalytic and/or can be enhanced by
the dynamic coupling of the H-transfer reaction coordinate to
the environmenti.e., by promoting vibrationsremains
contentious
4-7
and awaits a definitive experimental test. The
observation of strongly temperature-dependent KIEs has been
used to infer such environmental coupling,
8-10
but other
experimental probes are needed. One potential probe is
hydrostatic pressure. As semiclassical KIEs arise due to
differences in vibrational zero-point energy, which have been
shown to be insensitive to several kbar changes in pressure (the
typical experimental range),
11,12
the pressure dependence of a
KIE has been used as evidence for H-tunneling.
13-15
We have
extended this approach to infer environmental coupling from
the combined pressure and temperature (p-T) dependence of
H-transfer reactions.
15-17
While p-T pressure-jump experi-
ments are now established as a useful method of probing the
free energy landscape of, e.g., protein folding,
18
the utility of p-
T experiments as a probe of tunneling and/or environmental
coupling during enzymatic H-transfer remains uncertain as, to
date, this approach has only been used to study a small subset
of enzymatic reactionshydride transfers catalyzed by a small
number of reductase and dehydrogenase enzymes.
15,17,19,20
To
investigate more generally the utility of variable pressure studies
in probing such reactions, we have extended the p-T approach
here to study an unrelated enzyme reaction, proton transfer
during the reductive-half reaction (RHR) of bacterial aromatic
amine dehydrogenase (AADH) with phenylethylamine (PEA).
The RHR of AADH involves a rate-limiting proton transfer
from a tryptophan tryptophylquinone (TTQ)-substrate
iminoquinone adduct to an active-site aspartate (Scheme
1).
21-23
The RHR with the substrate tryptamine exhibits a
H/D KIE of about 55one of the largest proton KIEs
observed in an enzyme
21
and the proton transfer has a large
tunneling component
21,24
assisted by a putative promoting
vibration.
22,24,25
The RHR with para-substituted PEAs is about
100-fold slower (yet appears to be fully rate-limiting) than with
tryptamine, possibly due to a reduction in the reaction driving
force.
23
The KIE is also smaller (∼1020) with para-
substituted PEAs and, unlike the reaction with tryptamine, is
measurably temperature-dependent to varying degrees, depend-
ing on the substrate and buffer conditions.
23
In this report, we
characterize the p-T dependence of the RHR of AADH with
PEA. We show that the origin of the pressure dependence of
KIEs can be more complex than previously reported, attributed
to anisotropic protein (de)compression mediated by hydro-
static pressure. This has important implications for under-
Received: March 12, 2012
Published: May 26, 2012
Article
pubs.acs.org/JACS
© 2012 American Chemical Society 9749 dx.doi.org/10.1021/ja3024115 | J. Am. Chem. Soc. 2012, 134, 9749-9754