Research Article
Advancing Global Marine Biogeography
Research with Open-source GIS Software
and Cloud Computing
Ei Fujioka
Marine Geospatial Ecology Lab
Duke University
Edward Vanden Berghe
Institute of Marine and Coastal
Sciences
Rutgers University
Ben Donnelly
Marine Geospatial Ecology Lab
Duke University
Julio Castillo
Universidad Simón Bolívar
Jesse Cleary
Marine Geospatial Ecology Lab
Duke University
Chris Holmes
OpenGeo
Sean McKnight
Department of Public Works
City of Durham
Patrick Halpin
Marine Geospatial Ecology Lab
Duke University
Abstract
Across many scientific domains, the ability to aggregate disparate datasets enables
more meaningful global analyses. Within marine biology, the Census of Marine
Life served as the catalyst for such a global data aggregation effort. Under the
Census framework, the Ocean Biogeographic Information System was established
to coordinate an unprecedented aggregation of global marine biogeography data.
The OBIS data system now contains 31.3 million observations, freely accessible
through a geospatial portal. The challenges of storing, querying, disseminating,
and mapping a global data collection of this complexity and magnitude are sig-
nificant. In the face of declining performance and expanding feature requests, a
redevelopment of the OBIS data system was undertaken. Following an Open
Source philosophy, the OBIS technology stack was rebuilt using PostgreSQL,
Address for correspondence: Ei Fujioka, Marine Geospatial Ecology Lab, Nicholas School, Duke
University, LSRC A328, Duke University, Durham, NC 27708, USA. E-mail: efujioka@duke.edu
Transactions in GIS, 2012, 16(2): 143–160
© 2012 Blackwell Publishing Ltd
doi: 10.1111/j.1467-9671.2012.01310.x