doi:10.1016/j.gca.2005.02.027
Molecular formulae of marine and terrigenous dissolved organic matter detected by
electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
BORIS P. KOCH,
1,
*MATTHIAS WITT,
2
RALPH ENGBRODT,
1
THORSTEN DITTMAR,
3
and GERHARD KATTNER
1
1
Alfred-Wegener-Institut für Polar- und Meeresforschung, Am Handelshafen 12, 27570 Bremerhaven, Germany
2
Bruker Daltonik GmbH, Fahrenheitstrasse 4, 28359 Bremen, Germany
3
Florida State University, Department of Oceanography, OSB 311, Tallahassee, FL 32306-4320, USA
(Received July 6, 2004; accepted in revised form February 21, 2005)
Abstract—The chemical structure of refractory marine dissolved organic matter (DOM) is still largely
unknown. Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI FT-
ICR-MS) was used to resolve the complex mixtures of DOM and provide valuable information on elemental
compositions on a molecular scale. We characterized and compared DOM from two sharply contrasting
aquatic environments, algal-derived DOM from the Weddell Sea (Antarctica) and terrigenous DOM from pore
water of a tropical mangrove area in northern Brazil. Several thousand molecular formulas in the mass range
of 300 – 600 Da were identified and reproduced in element ratio plots. On the basis of molecular elemental
composition and double-bond equivalents (DBE) we calculated an average composition for marine DOM. O/C
ratios in the marine samples were lower (0.36 0.01) than in the mangrove pore-water sample (0.42). A small
proportion of chemical formulas with higher molecular mass in the marine samples were characterized by very
low O/C and H/C ratios probably reflecting amphiphilic properties. The average number of unsaturations in
the marine samples was surprisingly high (DBE = 9.9; mangrove pore water: DBE = 9.4) most likely due
to a significant contribution of carbonyl carbon. There was no significant difference in elemental composition
between surface and deep-water DOM in the Weddell Sea. Although there were some molecules with unique
marine elemental composition, there was a conspicuous degree of similarity between the terrigenous and
algal-derived end members. Approximately one third of the molecular formulas were present in all marine as
well as in the mangrove samples. We infer that different forms of microbial degradation ultimately lead to
similar structural features that are intrinsically refractory, independent of the source of the organic matter and
the environmental conditions where degradation took place. Copyright © 2005 Elsevier Ltd
1. INTRODUCTION
Marine dissolved organic matter (DOM) represents one of
the largest active pools of organic carbon in the global carbon
cycle (Hedges, 1992). Its amount (700 10
15
g C) is compa-
rable to that of carbon in atmospheric CO
2
(750 10
15
g C).
An annual net oxidation of 1% of dissolved organic carbon
(DOC) would create a CO
2
flux larger than the anthropogenic
(fossil-fuel derived) flux (Hedges, 2002). Most of marine DOC
(90%–95%) is present in the deep-sea and represents a refrac-
tory background with low concentrations of 35– 45 M DOC
(e.g., Kähler et al., 1997; Hopkinson et al., 1997; Hansell and
Carlson, 1998; Ogawa et al., 1999) and average residence times
of several thousand years (Williams and Druffel, 1987). Sur-
face DOM in the ocean is characterized by higher DOC con-
centrations and significant proportions of more labile com-
pounds (e.g., Hopkinson et al., 2002). Despite the importance
of DOM, the composition, sources, diagenesis and preservation
mechanisms are largely unknown and represent a missing link
in models of global elemental cycles.
The fate of terrestrial-derived DOM in the oceans is still a
conundrum in organic geochemistry. Global discharge of riv-
erine DOC is sufficient alone to sustain turnover of the entire
pool of organic carbon dissolved in seawater (Williams and
Druffel, 1987; Hedges et al., 1997). However, analyses of
lignin phenols as unequivocal terrestrial markers suggest that
probably only 0.7 to 2.4% of total DOM in the oceans is of
terrigenous origin (Opsahl and Benner, 1997). Significant re-
moval of terrigenous DOM via sorption to mineral particles and
subsequent sedimentation is unlikely because the discharge of
riverine particulate organic carbon alone is sufficient to account
for all organic carbon preserved in marine sediments (Berner,
1989). While photodegradation is known to reduce aromaticity
of terrestrial humic substances (e.g., Opsahl and Benner, 1998),
this process alone cannot account for the almost complete loss
of terrigenous compounds in the ocean (Hedges et al., 1992). It
is possible that the disappearance of terrestrial DOC in the deep
oceans might be due to some combined effects of photodegra-
dation and efficient decomposition and reworking by marine
microbes.
The ultimate source of most DOM in the ocean is probably
marine primary production. Ogawa et al. (2001) showed that
marine bacteria themselves “produce” refractory DOM out of
different simple substrates within days. This material persisted
for more than 1 yr, and only 10 to 15% of the DOM was
identified as amino acids and sugars, the principal building
blocks of freshly produced, labile DOM.
The chemical identity of DOM can be the key to the most
urgent questions regarding the cycling of DOM in the ocean. It
is known that both seawater and freshwater humic substances
have predominantly carboxyl and hydroxyl functional groups
(Thurman, 1985) and that freshwater substances have higher
aromatic contents and more phenolic hydroxyl groups. Molec-
* Author to whom correspondence should be addressed (bkoch@awi-
bremerhaven.de).
Geochimica et Cosmochimica Acta, Vol. 69, No. 13, pp. 3299 –3308, 2005
Copyright © 2005 Elsevier Ltd
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