0026-2617/05/7404- © 2005 Pleiades Publishing, Inc. 0459
Microbiology, Vol. 74, No. 4, 2005, pp. 459–462. Translated from Mikrobiologiya, Vol. 74, No. 4, 2005, pp. 533–536.
Original Russian Text Copyright © 2005 by Yurkov.
The Saccharomyces sensu stricto complex, which, it
was recently proposed, should be restricted to the genus
Saccharomyces [1], contains at least six biological sib-
ling species: Saccharomyces cerevisiae Meyen ex
Hansen, S. paradoxus Bachinskaya, S. bayanus Sac-
cardo, S. cariocanus Naumov et al., S. kudriavzevii
Naumov et al., and S. mikatae Naumov et al. Isolation
of the strains of this complex is almost completely lim-
ited to industrial fermentation processes. Not much is
known about their distribution in nature. Representa-
tives of Saccharomyces paradoxus have been most fre-
quently found in natural habitats. This species has a
vast natural habitat and is represented by a number of
divergent populations: European [2–4], Far Eastern [5],
Hawaiian [6], and North American [7]. However, the
Saccharomyces cerevisiae habitat is thought of as inter-
rupted, since representatives of this species have never
been isolated in Siberia, where only representatives of
the close species Saccharomyces cerevisiae have been
found.
During our investigations of yeast communities on
plant substrates in Novosibirsk oblast [8], we isolated,
from oak exudates, two strains that were identified as
S. paradoxus according to the results of biochemical
tests. Molecular biological investigations confirmed the
affiliation of these isolates with the species S. para-
doxus. Both strains demonstrated intense sporulation.
The isolation of these yeast strains in western Siberia is
of considerable interest. Earlier, only representatives of
S. cerevisiae [9] had been isolated in this region. The
joint occurrence of different Saccharomyces species
was previously noted in Far East [5].
The strains were deposited with the Collection of
the Soil Biology Department, Faculty of Soil Science,
Moscow State University, and given the strain designa-
tions KBP-3828 and KBP-3829.
MATERIALS AND METHODS
Samples of pedunculate oak (Quercus robur) exu-
date were obtained in August 2003 from the oak plant-
ing territory of the Central Siberian Botanical Garden,
Siberian Division, Russian Academy of Sciences
(Novosibirsk). In total, we analyzed 12 oak exudates
from 8 trees. The samples of oak exudates were taken
together with bark pieces. Two strains were isolated
from two exudate flows in different parts of one tree
trunk. The isolation of yeasts was carried out in accor-
dance with the enrichment culture method. The bark
pieces were incubated in a liquid malt extract medium
at room temperature for 2–4 days until the appearance
of signs of intensive fermentation. Then, the culture
was plated onto malt extract agar that had been acidi-
fied to pH 4–4.5 with 40% lactic acid so as to inhibit
bacterial growth. The plates were incubated at room
temperature for a week. The grown yeast colonies were
isolated in pure cultures.
Identification of the isolates was performed, based
on morphological and physiological properties, accord-
ing to determination manuals [10, 11].
Isolation and amplification of DNA was performed
using a standard method. The amplification of 5.8S rDNA
and the internal transcriptional spacers ITS1 and ITS2
(5.8S-ITS fragment) was accomplished with the use of the
primers pITS1 (5'-TCCGTAGGTGAACCTGCGG-3')
and pITS4 (5'-CCTCCGCTTATTGATATGC-3'). A PCR
reaction was run in 30 μl of a reaction mixture that con-
tained a PCR buffer, 20 mM (NH
4
)
2
SO
4
, 3 mM MgCl
2
,
0.25 mM dNTP, 0.30 μmol of each primer, 1.25 units of
Tag polymerase (Sintol, Russia), and 20 ng of the ana-
lyzed genomic DNA. A Tertsik thermal cycler (DNK-
tekhnologiya, Russia) was operated on the following
regime: initial heat denaturation of native DNA at 94°C
EXPERIMENTAL
ARTICLES
First Isolation of the Yeast Saccharomyces paradoxus
in Western Siberia
A. M. Yurkov
Soil Science Faculty, Moscow State University,
Vorob’evy gory, Moscow, 119899 Russia
Received September 6, 2004; in final form, December 16, 2004
Abstract—Two ascomycetous yeast strains have been isolated near Novosibirsk from oak exudate. The strains
have been identified as Saccharomyces paradoxus Bachinskaya based on the results of biochemical tests. The
conspecificity of the isolates with S. paradoxus was confirmed by electrophoretic karyotyping and restriction
analysis of the ITS region of its rDNA. This first isolation of S. paradoxus in Siberia provides evidence for the
continuity of its natural habitats.
Key words: Saccharomyces paradoxus, exudate, western Siberia, karyotyping, restriction analysis.