E~E~ER
Binding Ability of a-Ketoamide
Unit in Amino Acid Derivatives
Tatiana Yu. Sliva, Anna M. Duda, Vladimir M. Amirkbanov, Igor Fritski, Tadeusz Ghrwiak,
and Henryk Koztowski
TYuS, VMA, IF. Faculty of Chemistry, University of Kiev, Kiev, Ukraine.--AMD, TG, HK. Faculty of
Chemistry, University of Wrodaw, Y0383 Wroctaw, Poland
Abstract
An X-ray study of pyruvyl-L-methionine has shown that
in the a-ketoamide group, the CO-CO bond is in trans
orientation. Potentiometric and spectroscopic (EPR, CD,
UV-VIS) studies of this ligand with Cu 2 + indicated that
a-ketoamides of amino acids are efficient chelating agents
for cupric ions able to involve their amide nitrogen in
metal ion binding witbont tbe need for an anchoring
site, e.g., in peptides. The likely modification of pyruvic
moiety in basic solution (hydration) may have a distinct
effect on the binding ability of the title ligands. © 1997
Elsevier Science Inc. Journal of Inorganic Biochemistry 6 Y,
67-71 (1997)
to amide nitrogen may potentially efficiendy stabilize the
Cu 2 + species and allow us to deprotonate and coordinate
the neighboring nitrogen atom [6].
Experimental
Ligand Synthesis
Pyruvyl-L-methionine (pyr-Met) was synthesized in two
steps according to the procedure given by Bergrnan and
Grafe [7]. See Scheme I. Ligand was crystallized from
aqueous solution and used for further studies. Purity was
checked by potentiometry. I H NMR, and elemental anal-
ysis [CHN%, cal. (found), C-43.82, (43.65), H-5.98,
(6.10), N-6.39, (6.20)].
Introduction
The ct-ketoamide unit (-NH-CO-CO-) is a key struc-
tural element involved in the binding of powerful im-
munosuppressants (e.g., rapamycin) to protein immuno-
phylins and in inhibiting their m-tram isomerase [1-2].
The major interaction of the a-ketoamide unit with
protein is the hydrogen bond system with amino acid side
chains of protein. The preferred structure of the ot-keto-
amide group is not well understood, although closely
related oxalamide moiety in retro-bispeptides
(-NH-CO-CO-NH-) assumes planar or nearly planar
tram conformation, even with bulky substituents on the
nitrogen atoms, except when the nitrogen atom is part of
a cyclic system as a prolyl residue [3].
The a-ketoamide group has three potential metal bind-
ing sites, including strongly basic amide nitrogen and two
weakly coordinating carbonyl oxygens. In the case of a
peptide bond CO-NH, both types of donors could be
involved in metal ion binding, but usually an anchoring
site is necessary to protect against metal ion hydrolysis
[4, 5]. In the case of peptides, the anchoring group for
metal ions like Cu 2+ is usually the N-terminal amine
nitrogen or side-chain donor, e.g., imidazole nitrogen.
The carboxylate is a very poor binding group, and in the
case of peptides, is unable to efficiently anchor Cu 2+
ions. However, the presence of two carbonyl groups close
Addresscorrespondence to: Prof. Hi Kozlowski,Faculty of Chemistry,
University of Wrodaw, F.Joliot-Curie 14, 50383 Wrochw,Poland.
X-Ray Structure of pyr-Met
Colorless crystals were grown by slow evaporation from
aqueous solution. Crystal data and the details of data
collection and refinement procedure are given in Table 1.
Selected bond lengths and torsion angles are given in
Tables 2 and 3. Intensity data were collected with a KM4
computer-controlled four-circle diffractometer [8]. The
ligand structure was solved by direct methods using the
SHELXS-86 set of programs [9], and refined by full-
matrix least-squares with anisotropic parameters for all
nonhydrogen atoms. All hydrogen atoms were placed at
computed positions, as determined from the successive
Fourier difference maps. Computations were performed
with a PC/AT computer using the Syntex XTL/XTLE
computational package [10]. Sources of neutral atomic
scattering factors for all atoms are given in [11].
O
II //o
H C--C--C--NH--CH--C.~
3 II I --OH
O CH
I 2
CH
12
S
I
CH
3
Scheme I.
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