Neuroinformatics
© Copyright 2007 by Humana Press Inc.
All rights of any nature whatsoever are reserved.
1539-2791/07/1–16/$30.00 (Online) 1559-0089
DOI: 10.1385/NI:5:1:1
Original Article
Web-Based Method for Translating Neurodevelopment
From Laboratory Species to Humans
Barbara Clancy,*
,1,2
Brandon Kersh,
1
James Hyde,
1
Richard B. Darlington,
3
K. J. S. Anand,
2
and Barbara L. Finlay
3
1
Department of Biology, University of Central Arkansas, Conway,Arkansas 72035;
2
Department
of Pediatrics, Neurobiology & Developmental Sciences, University of Arkansas for Medical Sciences,
Arkansas Children’s Hospital Research Institute, Little Rock,Arkansas 72205; and
3
Department
of Psychology, Cornell University, Uris Hall, Ithaca, New York 14853
79
*Author to whom all correspondence and reprint requests should be addressed.
E-mail: barbaraclancy@mac.com; clancybarbara@UAMS.edu
Abstract
Biomedical researchers and medical pro-
fessionals are regularly required to compare a
vast quantity of neurodevelopmental litera-
ture obtained from an assortment of mammals
whose brains grow at diverse rates, including
fast developing experimental rodent species
and slower developing humans. In this article,
we introduce a database-driven website,
which was created to address this problem
using statistical-based algorithms to integrate
hundreds of empirically derived developing
neural events in 10 mammalian species
(http://translatingtime.net/). The site, based
on a statistical model that has evolved over the
past decade, currently incorporates 102 dif-
ferent neurodevelopmental events obtained
from 10 species: hamsters, mice, rats, rabbits,
spiny mice, guinea pigs, ferrets, cats, rhesus
monkeys, and humans. Data are arranged in
a Structured Query Language database,
which allows comparative brain development
measured in postconception days to be
converted and accessed in real time, using
Hypertext Preprocessor language. Algorithms
applied to the database also allow predictions
for dates of specific neurodevelopmental
events where empirical data are not available,
including for the human embryo and fetus.
By designing a web-based portal, we seek to
make these comparative data readily avail-
able to all those who need to efficiently esti-
mate the timing of neurodevelopmental
events in the human fetus, laboratory species,
or across several different species. In an effort
to further refine and expand the applicability
of this database, we include a mechanism to
submit additional data.
Index Entries: Bioinformatics; comparative
development; cross-species database; humans;
maturational timetables.
(Neuroinformatics DOI: 10.1385/NI:5:1:1)