Characterization of Dynamics and Reactivities of Solvated
Ions by Ab Initio Simulations
THOMAS S. HOFER, HUNG T. TRAN, CHRISTIAN F. SCHWENK, BERND M. RODE
Department of Theoretical Chemistry, Institute of General, Inorganic and Theoretical Chemistry,
University of Innsbruck Innrain 52a, A-6020 Innsbruck, Austria
Received 22 May 2003; Accepted 2 July 2003
Abstract: Based on a systematic investigation of trajectories of ab initio quantum mechanical/molecular mechanical
simulations of numerous cations in water a standardized procedure for the evaluation of mean ligand residence times
is proposed. For the characterization of reactivity and structure-breaking/structure-forming properties of the ions a
measure is derived from the mean residence times calculated with different time limits. It is shown that ab initio
simulations can provide much insight into ultrafast dynamics that are presently not easily accessible by experiment.
© 2003 Wiley Periodicals, Inc. J Comput Chem 25: 211–217, 2004
Key words: solvated ions; ab initio simulations; dynamics
Introduction
As one of the fundamental factors determining chemical reactivity,
dynamics have always been the subject of intensive research. This
is true, in particular for the dynamics of complex formation and
dissociation reactions involving metal ions, solvent molecules, and
other ligands, as such reactions determine not only industrial
processes but also numerous essential biological systems.
1–3
Experimental methods have been successively developed to get
access to ever faster exchange reactions by physicochemical mea-
surements such as stopped-flow kinetics or ultrasonic techniques
as well as spectroscopic methods such as nuclear magnetic reso-
nance. The time scale of these methods also sets the limits for the
measurability of characteristic data for very fast reactions. NMR
methods allow accurate direct measurements of velocity constants
up to 10
5
s
-1
, and estimations via line widths to 10
9
s
-1
.
However, numerous ligand exchange processes as well as other
dynamic processes within the complexes such as the Jahn–Teller
distortions, occur on a much faster time scale than presently
accessible by experimental tools.
4
Applying statistical mechanics to the processes in condensed
systems at the molecular level has created the very successful tools
of Monte Carlo (MC) and Molecular Dynamics (MD) simula-
tions.
5
The latter method describes the time-dependent events in
very small time steps (femtoseconds or fractions of femtoseconds)
and thus supplies trajectories suitable to “measure” dynamics on
the femtosecond and picosecond scale. This approach should be,
therefore, the ideal tool to analyze ligand exchange reactions
occurring so fast that experimental investigations are not yet
feasible. However, methodical problems associated with the sim-
ulation technique have to be clarified and the evaluation of trajec-
tories to be standardized before using the simulation-based kinetic
data as reliable and realistic measures, in particular when they are
lying beyond the experimentally accessible time scale.
In several previous works we have been able to demonstrate
that classical, even three-body corrected MD simulations are ca-
pable of supplying fairly accurate data for structure and composi-
tion of the first coordination shell of main group
6–8
and transition
metal ions,
9 –12
but that they fail to predict correct data for libra-
tional/vibrational motions and for the composition of the second
coordination shell. These data are of great importance, however, to
describe dynamical processes, in particular ligand exchange reac-
tions between both coordination spheres and with the bulk. Hybrid
ab initio Hartree–Fock quantum mechanical/molecular mechanical
simulations
13,14
proved to achieve the necessary accuracy, al-
though at enormous costs in terms of computational effort, which
increases by a factor of 100. On the other hand, the use of simple
density functionals as in the RIDFT method
15,16
or in Car–Par-
rinello simulations
17
can lead to first-shell coordination numbers
that are lower than almost all experimental and other theoretical
data, for example, six for Ca(II) and five for Cu(II).
6,18 –20
The
more sophisticated B3LYP-DFT
21
formalism for the quantum
mechanically treated region in QM/MM simulations leads to a
similar degree of accuracy as the ab initio Hartree–Fock method,
but without saving computer time.
6
The limits of the presently
Correspondence to: B. M. Rode; e-mail: bernd.m.rode@uibk.ac.at
Contract/grant sponsor: Austrian Science Foundation; Contract/grant
number: P10221-N08
© 2003 Wiley Periodicals, Inc.