Assessment of metals in detection of TB biomarkers: Novel
computational approach
Rupashree S. Ray
a
, Biplab Sarma
a
, Swomitra Mohanty
a, b
, Keith Prisbrey
a
,
Mano Misra
a, b, *
a
Metallurgical Engineering, University of Utah, Salt Lake City, UT 84112, USA
b
Chemical Engineering, University of Utah, Salt Lake City, UT 84112, USA
highlights graphical abstract
DFT calculations to identify suitable
metal ion to be used for TB detection.
Proper methodology adopted to
evaluate mono, di and trivalent metal
ions.
Exploring fundamental mechanism
of interaction of TB biomarkers with
metal ions.
article info
Article history:
Received 25 April 2014
Received in revised form
14 April 2015
Accepted 18 April 2015
Available online 16 May 2015
Keywords:
Computational techniques
Ab initio calculations
Electronic structure
Nanostructures
DFT
abstract
Computational approach has been applied for the identification of suitable metal ions that can be
functionalized on titania (TiO
2
) nanotubes for possible application as a detection assembly for detecting
different pathogenic conditions present in the human body such as tuberculosis. B3LYP Density func-
tional calculations are performed to quantify the binding affinity of a set of metal ions of different
valency such as: monovalent: Li
1þ
, Cu
1þ
, divalent: Fe
2þ
, Ni
2þ
, Cr
2þ
, Co
2þ
, Ca
2þ
, Mg
2þ
, Zn
2þ
, Cu
2þ
trivalent:
In
3þ
, Co
3þ
, Fe
3þ
, Al
3þ
, Cr
3þ
for the biomarker molecules such as methyl phenylacetate, methyl p-anisate,
methyl nicotinate, and o-phenyl anisole that are responsible for the detection of tuberculosis. Also a
quantitative analysis has been discussed by addressing the selectivity of metals towards the biomarkers
in presence of volatile organic compounds commonly present in human breath. Present study shows that
among the trivalent and divalent metal ions considered in this work, Al
3þ
and Cu
2þ
selectively shows a
relatively higher binding affinity towards the above biomarker molecules in presence of volatile organic
compounds. The result from this study can be used for the fabrication of sensing system (metal
functionalized TiO
2
-nanotube) for the detection of tuberculosis which is currently undergoing in our
research group.
© 2015 Elsevier B.V. All rights reserved.
1. Introduction
Recently the analysis of volatile organic biomarkers (VOBs) in
biological specimens has attracted a tremendous amount of clinical
interest [1]. Prior investigation of VOBs has also indicated
* Corresponding author. Metallurgical Engineering, University of Utah, Salt Lake
City, UT 84112, USA.
E-mail address: mano.misra@utah.edu (M. Misra).
Contents lists available at ScienceDirect
Materials Chemistry and Physics
journal homepage: www.elsevier.com/locate/matchemphys
http://dx.doi.org/10.1016/j.matchemphys.2015.04.018
0254-0584/© 2015 Elsevier B.V. All rights reserved.
Materials Chemistry and Physics 161 (2015) 1e8