Journal of Computational Intelligence in Bioinformatics.
ISSN: 0973-385X Volume 1 Number 2-3 (2008) pp. 93–108
© Research India Publications
http://www.ripublication.com/jcib.htm
DLact: An Antimicrobial Resistance Gene Database
Reema Singh
Scientist-I
Biomedical Informatics Center
Indian Council of Medical Research
Ansari Nagar, New Delhi - 110029, India
E-mail:reemas@icmr.org.in
Suchir
Scientist-I
Biomedical Informatics Center
Indian Council of Medical Research
Ansari Nagar, New Delhi - 110029, India
E-mail:suchir@icmr.org.in
Harpreet Singh*
Scientist B
Biomedical Informatics Center
Indian Council of Medical Research
Ansari Nagar, New Delhi - 110029, India
E-mail:hsingh@icmr.org.in
Abstract
Lactamases are the main cause of antimicrobial resistance in the bacterial
pathogens. Here, we introduce DLact, a curated collection of lactamase
like proteins from bacterial genomes. The database currently contains
2020 lactamase like genes from 814 sequenced bacterial genomes. Of
which 1971 (97.57%) were present on chromosome and only 49 (2.42%)
were present on plasmids. The database can be searched using text and
sequence queries. Diversity at the taxonomic, microbial ecology, domain
length and sequence was studied. DLact database may be used for variety
of biomedical research such as to develop diagnostic primers and probes
and in identifying pathways controlling/affecting the expression of
antimicrobial genes, comparative protein modeling and drug designing, as
well as those interested in broad subjects such as lateral gene transfer and
Codon usage. The database will be updated bi-yearly using in-house