The planar B
6
cluster as a motif for doping metal
cation (Al
3+
): A DFT study
Md. Rakib Hossain
1
, Milon
2
, Syed Mahedi Hasan
3
, Md. Kamal Hossain
4
,
Jahirul Islam Khandaker
5
, Farid Ahmed
6
, Md. Abul Hossain
7
Department of Physics, Jahangirnagar University, Savar, Dhaka-1342
Email: rakibju.r@gmail.com
1
, milonpaul8@gmail.com
2
, tamim840@gmail.com
3
, khossain@juniv.edu
4
, kijahir80@juniv.edu
5
,
fahmed@juniv.edu
6
, mdabulh@juniv.edu
7
Abstract— This present research investigation reports various
properties of doped and undoped boron cluster (B
6
) such as
charge distribution, stability, adsorption energy, dipole moment,
reactivity, vibrational frequency, optical property, orbital
analysis etc. on the basis of B
6
motif, which is actually the
hexagonal vacancy of borophene (B
36
) cluster. We have used the
density functional theory (DFT) calculations at the B3LYP/SDD
level of theory. At first, we have studied the properties of B
6
motif
and then Al-doped B
6
cluster with pyramidal and bi-pyramidal
geometries have been investigated and compared them with the
planar B
6
motif.
Keywords— DFT; B3LYP/SDD; Motif; 2D Material;
Borophene; UV-Visible Spectrum; IR Spectrum; HOMO-LUMO
Orbital
I. INTRODUCTION
Graphene, an allotrope of carbon, is a single layer of bulk
graphite which was first synthesized by Novoselov, Geim and
co-workers in 2004 [1]. After their ground breaking work,
scientific community started to work enormously to enhance its
properties and graphene now has many important commercial
applications. Graphene shows very good physical, chemical
and mechanical properties which make it more attractive. It can
be used as electrode for various cells and batteries [2], sensors
[3], in numerous bio-medical applications [4], as light harvester
[5] and in other promising applications [6]. After the successful
investigation on various graphene based devices, researcher
started to study and conceivably synthesize more two
dimensional nanosheet based on other elements from their
three dimensional structure or utilizing a bottom-up synthesis
route. Graphyne, Borophene, Germanene, Silicene, Stanene,
Phosphorene, Molybdenite are some notable examples that has
been previously synthesized and similar to a two dimensional
layer of carbon they consists of boron, germanium, silicon, tin,
phosphorus, molybdenum respectively. These nanosheets also
exhibit very promising phenomena similar to graphene.
Pure boron is an electron deficient element which forms
cage like fullerene structure and an excellent candidate for 2D
nanosheet, the so called “borophene”. The 2D layer of boron
has various chemical structures which forms by changing the
number of boron atoms and by adding other atoms on the
system and possesses diverse bonding characteristics. The first
synthesis and characterization of planar boron is a triple-decker
complex containing a planar, six-membered 1,2-B
6
H
4
Cl
2
ring
which attracted the scientific community as an potential 2D
nanosheet [7]. In recent years, researchers put a lot of effort to
theoretically investigate this nanomaterial and also
experimentally synthesize several boron clusters with different
coordination number. Recently, scientists has successfully
synthesized various boron planar and quasiplanar boron
clusters with/out doping other elements of periodic table [8]. In
case of large number of boron atoms in the cluster, tetragonal,
pentagonal, hexagonal vacancies are created for the combined
charge distribution of the boron atoms. Tetragonal and
pentagonal vacancies are created for up to B
23
cluster [9] and
hexagonal vacancy is created for B
36
cluster and it is observed
that various change of electrical and chemical properties are
occurred for the modification of the hexagonal vacancy of B
36
cluster [10].
In our investigation, we have studied hexagonal B
6
motif to
understand the nature of boron cluster containing such
hexagonal vacancy by performing different calculation. We
have also investigated the B
6
motif by incorporating metal (Al)
atom and studied the change of various properties of the doped
boron cluster. We have calculated the adsorption energy and
other related parameters for understanding the stability of
adsorbed structures. The global minimum searches have been
carried out from the HOMO-LUMO energies. We have
visualized the HOMO-LUMO energy gaps by density of state
(DOS) spectrum. The HOMO-LUMO energy gaps, chemical
potentials, charge transfer abilities have been also investigated.
The optical property has been studied from the ultra violet
visible spectra calculation.
II. COMPUTATIONAL METHOD
All quantum mechanical calculations have been executed
by Gaussian 09 program [11]. The geometry of B
6
motif and
the structures with added atom have fully been optimized by
density functional theory (DFT) employing Becke’s (B3) [12]
exchange functional combining Lee, Yang, and Parr’s (LYP)
correlation functional [13] which is known as B3LYP level of
theory and we have used SDD basis set [14] because our
investigating system is in gas phase. After completing the
initial geometry, molecular orbital calculations have been
performed at the same level of theory. The adsorption energies
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