Mycologia Iranica 7(1): 135 – 142, 2020 DOI: 10.22043/mi.2021.123688
Submitted 11 Jan. 2020, accepted for publication 3 March 2020
Corresponding Author E-mail: jnikkhah@ut.ac.ir
© 2020, Published by the Iranian Mycological Society
http://mij.areeo.ac.ir
Original Article
Cross-transferability of SSR loci of Phaeosphaeria nodorum to
Mauginiella scaettae
H. Alvanipour
H. Aminian
Department of Entomology and Plant Pathology,
Abouraihan Campus, University of Tehran,
Pakdasht, Iran
Kh. Alami-Saeid
Department of Plant Production Engineering and
Genetics, Faculty of Agriculture, Agricultural
Sciences and Natural Resources University of
Khuzestan, Mollasani, Iran
K. Sorkheh
Department of Production Engineering and Plant
Genetics, Faculty of Agriculture, Shahid Chamran
University of Ahvaz, Ahvaz, Iran
R. Farrokhinejad
Department of Plant Protection, Faculty of
Agriculture, Shahid Chamran University of Ahvaz,
Ahvaz, Iran
A. A. Nejati
Department of Plant Production Engineering and
Genetics, Faculty of Agriculture, Agricultural
Sciences and Natural Resources University of
Khuzestan, Mollasani, Iran
M. Javan-Nikkhah✉
Department of Plant Protection, College of
Agriculture and Natural resources, University of
Tehran, Karaj, Iran
Abstract: Mauginiella scaettae is one of the most
critical and devastating fungal pathogens causing date
palms inflorescence rot (khamedj). This pathogen, in
severe attacks, can cause 80% loss of the annual
harvest. In this study, seven SSR loci (have
previously been isolated and characterized in
Phaeosphaeria nodorum) were evaluated for
transferability on 13 single-spore isolates of
M. scaettae obtained from eight different regions of
Khuzestan province, Iran. A high level of
transferability of SSRs was detected. Five primer
pairs, including SNOD1, SNOD26, SNOD22,
SNOD17, and SNOD21, were successfully amplified
and produced an amplification product of the
expected size range in thirteen isolates collected from
eight locations. Two microsatellite markers, including
SNOD5 and SNOD16, were not amplified and
showed no amplification. The rate of amplification of
five amplified SSR loci was different among isolates.
A total of sixteen alleles were obtained across the five
SSRs loci for thirteen isolates. Among all isolates
examined, the highest rate (92.3%) and the lowest
rate (7.7%) of amplification were done for SNOD26
and SNOD21 SSR loci, respectively. The loci
SNOD1, SNOD26, and SNOD22 generated four, and
SNOD17 locus generated three alleles, and the lowest
number of alleles (one allele) was identified in the
SNOD21 locus.
Keywords: Date palm, Khamedj disease, SSR locus,
ITS-rDNA, allele diversity
INTRODUCTION
Date palm (Phoenix dactylifera L.) provides an
excellent source of food with high nutritional values,
called a mine (Zaid & Wet 2002). In addition to
providing a wide range of essential nutrients, various
parts of the date plant can be used in different
industries. To eradicate food insecurity, malnutrition,
and food crises, FAO (The Food and Agriculture
Organization) has a unique look for the date palm and
implement different projects and programs in various
fields (Arias et al. 2016). Khuzestan province, located
in the southwest of Iran, is considered as one of the
most critical palm cultivation areas in Iran, which its
date fruits are exported to different countries.
Khuzestan province seems to be one of the places of
origin and distribution of date in the world (Zaid &
Wet 2002). The significant date palm cultivation
areas in Khuzestan include the southern, western, and
central parts of the province. One of the most
important diseases of palm in Khuzestan province is
khamedj disease (inflorescence rot). Based on our
field observations, due to the favorable environmental
conditions for the pathogen, Khuzestan province has a
higher incidence of disease than other Iran provinces.