Biodiversity Information Science and Standards 3: e34973
doi: 10.3897/biss.3.34973
Conference Abstract
Assessment of the quality of accession describing
metadata on plant genetic resources
Markus Oppermann , Stephan Weise
‡ Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
Corresponding author: Markus Oppermann (opperman@ipk-gatersleben.de )
Received: 29 Mar 2019 | Published: 30 Jul 2019
Citation: Oppermann M, Weise S (2019) Assessment of the quality of accession describing metadata on plant
genetic resources. Biodiversity Information Science and Standards 3: e34973. https://doi.org/10.3897/biss.3.34973
Abstract
In the wide-ranging field of biodiversity conservation, genebanks play a major role in the
preservation of cultivated plants. An important focus of genebanks is the comprehensive
documentation of the maintained material. This is a prerequisite to enable users to select
the most suitable material for e.g. research or breeding programs (Hoisington et al. 1999).
The German Federal ex situ Genebank for Agricultural and Horticultural Crops, which is
being hosted at IPK, is the largest genebank in Western Europe.
Within the multitude of data associated with plant material (e.g. from various -omics areas
or conservation management), the so-called passport data represent the most original and
oldest data in genebanks. These metadata are often subject to heterogeneity due to
historically different collection and curation, especially if they were received from different
institutions around the world. This leads to difficulties in handling these data and can result
in misinterpretations. In addition, there are correlations between the individual attributes of
the passport data which can lead to a different importance of the individual data points for
the users.
Major challenges for users are to estimate completeness, correctness and reliability of
these data. Thus, it is necessary to assess the quality of these data by defining a suitable
set of metrics. Unfortunately, classical data quality measurement metrics, e.g. (Klier 2008),
are not sufficient to fulfill the users' needs. Depending on the intention of the user, a
different focus is placed on the data. Moreover, the individual attributes of the respective
‡ ‡
© Oppermann M, Weise S. This is an open access article distributed under the terms of the Creative Commons Attribution
License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author
and source are credited.