Bioresource Technology 337 (2021) 125418
Available online 16 June 2021
0960-8524/© 2021 Elsevier Ltd. All rights reserved.
Integrated analysis of Whole genome sequencing and life cycle assessment
for polyhydroxyalkanoates production by Cupriavidus sp. ISTL7
Juhi Gupta
a
, Rashmi Rathour
a
, Neha Maheshwari
b
, Indu Shekhar Thakur
a, b, *
a
School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110 067, India
b
Amity School of Earth and Environmental Sciences, Amity University Haryana, Manesar, Gurugram 122413, India
HIGHLIGHTS G R A P H I C A L ABSTRACT
• Cupriavidus sp. ISTL7 reported 4.93 ±
0.4571 g L
-1
PHA production.
• PHA cluster including genes phaA, phaB
and phaC were revealed through WGS.
• LCA illustrated that PHA production
with acetate + glucose was most
sustainable.
• The production process can be improved
with respect to its energy expense.
• Gene encoding acetoacetyl-CoA reduc-
tase was cloned, expressed and purifed.
A R T I C L E INFO
Keywords:
Polyhydroxyalkanoates
Acetate
Life cycle assessment
Acetoacetyl-CoA reductase
Sustainability
ABSTRACT
The current study demonstrates the enhanced production capability of strain Cupriavidus sp. ISTL7 for poly-
hydroxyalkanoates (PHA) using acetate and glucose (4.93 ± 0.4571 g L
-1
) which was characterised analytically
by GC–MS, FTIR and NMR analysis. Whole genome sequencing of strain ISTL7 unveiled an array of PHA
metabolism genes which included phaA, phaB and phaC. Life cycle assessment of the protocol established that
the production was most sustainable with the carbon source acetate.
+ Glucose as compared to acetate/glucose alone. It also concluded that solvent extraction of PHA and energy
consumption during the process requires optimization to sustain the production on ecological fronts. Addi-
tionally, acetoacetyl-CoA reductase (phaB) gene was molecularly cloned, expressed and purifed (27 KDa, 2.63
mg/ml). Conclusively, Cupriavidus sp. ISTL7 is a potential strain for PHA production with a scope of improvement
on energy fronts which would transform the production environmentally and economically appealing.
1. Introduction
Cupriavidus is a taxon which belongs to the family Burkholderiaceae
and is a rod-shaped gram-negative bacterium. This genus is cosmopol-
itan in existence from industrial sites to anthropogenic settings (Ram-
achandran et al., 2018). This genus can perform multiple biovalorization
activities such as the production of biosurfactants, polyesters, poly-
saccharides etc. which attracts further attention to explore this potential
genus (Gupta et al., 2019)
Microbes usually exist in the form of aggregates which are recog-
nized as biological polymers. The biological polymers are categorized
into polysaccharides (cellulose), polyamides (cyanophycin), inorganic
* Corresponding author.
E-mail address: isthakur@mail.jnu.ac.in (I. Shekhar Thakur).
Contents lists available at ScienceDirect
Bioresource Technology
journal homepage: www.elsevier.com/locate/biortech
https://doi.org/10.1016/j.biortech.2021.125418
Received 11 May 2021; Received in revised form 10 June 2021; Accepted 12 June 2021