Calculation of Vibrational Spectra of Linear Tetrapyrroles. 3. Hydrogen-Bonded
Hexamethylpyrromethene Dimers
Maria-Andrea Mroginski,
†,‡
Ka ´ roly Ne ´ meth,
†
Tanja Bauschlicher,
†
Werner Klotzbu 1 cher,
†
Richard Goddard,
§
Oliver Heinemann,
§
Peter Hildebrandt,*
,‡
and Franz Mark*
,†
Max-Volmer-Laboratorium, Institut fu ¨r Chemie, Technische UniVersita ¨t Berlin, Sekr. PC 14,
Strasse des 17 Juni 135, D-10623 Berlin, Germany, Max-Planck-Institut fu ¨r Bioanorganische Chemie,
Postfach 101365, D-45413 Mu ¨lheim an der Ruhr, Germany, and Max-Planck-Institut fu ¨r Kohlenforschung,
Kaiser-Wilhelm-Platz 1, D-45470 Mu ¨lheim an der Ruhr, Germany
ReceiVed: September 16, 2004; In Final Form: December 19, 2004
The structure and vibrational spectra of hexamethylpyrromethene (HMPM) have been investigated by X-ray
crystallography, IR and Raman spectroscopies, and density functional theory calculations. HMPM crystallizes
in the form of dimers, which are held together by bifurcated N-H(‚‚‚N)
2
hydrogen bonds, involving one
intramolecular and one intermolecular N-H‚‚‚N interaction. The monomers are essentially planar, and the
mean planes of the monomers lie approximately perpendicular to one another, so that the four N atoms in the
dimer form a distorted tetrahedron. The structure of the HMPM dimer is well-reproduced by B3LYP/6-31G*
calculations. A comparison of the calculated geometry of the dimer with that of the monomer reveals only
small changes in the N-H‚‚‚N entity and the methine bridge angles upon dimerization. These are a result of
weakening of the intramolecular N-H‚‚‚N hydrogen bond and the formation of a more linear N-H‚‚‚N
intermolecular hydrogen bond. Using an empirical relation between the shift of the N-H stretching frequency
of pyrrole and the enthalpy of adduct formation with bases [Nozari, M. S.; Drago, R. S. J. Am. Chem. Soc.
1970, 92, 7086-7090], estimates of the strength of the intra- and intermolecular hydrogen bonds are obtained.
IR and Raman spectroscopies of HMPM and its isotopomers deuterated at the pyrrolic nitrogen atom and at
the methine bridge reveal that the molecule is monomeric in nonpolar organic solvents but dimeric in a solid
Ar matrix and in KBr pellets. The matrix IR spectra show a splitting of vibrational modes for the dimer,
particularly those involving the N-H coordinates. Due to intrinsic deficiencies of the B3LYP/6-31G*
approximation, a satisfactory reproduction of these modes of the monomeric and dimeric HMPM requires
specific adjustments of the NH scaling factors for the calculated force constants and, in the case of the NH
out-of-plane modes of HMPM dimers, also of intra- and intermolecular coupling constants. This parametrization
does not significantly affect the other calculated modes, which in general reveal a very good agreement with
the experimental data.
Introduction
Despite the methodological progress that has been achieved
in NMR spectroscopy and X-ray crystallography in recent years,
vibrational spectroscopy remains an indispensable tool for
elucidating structure-dynamics-function relationships of co-
factor-protein complexes, since it can provide important
information about the hydrogen bond interactions that largely
determine the molecular structure and reactivity of the prosthetic
group. Continuing our previous studies on model compounds
for the tetrapyrrole chromophore in the photoreceptor phyto-
chrome (for recent reviews see refs 1-3), we address here
hexamethylpyrromethene (HMPM; Chart 1).
4
The molecule is
interesting for a number of reasons: First, it is a mimic for the
central dipyrrole unit of phytochromobilin.
5
Second, it can form
both intra- and intermolecular hydrogen bonds involving the
N-H group, interactions which are thought to play a role in
the chromophore-protein complex in phytochrome. Third, it
represents an instructive model system for elucidating the effect
of hydrogen bond interactions on the vibrational spectra of
substituted pyrrole and pyrrolenine ring systems. In addition,
early on in our investigations we realized that whereas HMPM
occurs as a monomer in nonpolar organic solvents, in the solid
it occurs as a dimer, enabling us to study in detail the effect of
association on the vibration spectra.
In a recent work,
4
we analyzed the resonance Raman (RR)
spectrum of monomeric HMPM. However, Raman spectroscopy
applied to this problem has the disadvantage that most of the
modes that include coordinates of the N-H group exhibit only
* Corresponding authors. (P.H.) Telephone: +493031421419. Fax:
+0493031421122. E-mail: Hildebrandt@chem.tu-berlin.de. (F.M.) Tele-
phone: +492083063697. Fax: +492083063951. E-mail: mark@
mpi-muelheim.mpg.de.
†
Max-Planck-Institut fu ¨r Bioanorganische Chemie.
‡
Technische Universita ¨t Berlin.
§
Max-Planck-Institut fu ¨r Kohlenforschung.
CHART 1
2139 J. Phys. Chem. A 2005, 109, 2139-2150
10.1021/jp045805y CCC: $30.25 © 2005 American Chemical Society
Published on Web 02/22/2005