HLA-DQ polymorphism and degree of heteroplasmy of the A3243G mitochondrial DNA mutation in maternally inherited diabetes and deafness E. H. R. van Essen*, B. O. Roep², L. M. ¢t Hart³, J. J. Jansen*, J. M. W. Van den Ouweland³, H. H. P. J. Lemkes* and J. A. Maassen³ Abstract Aim Maternally inherited diabetes and deafness (MIDD) associates with a mutation at position 3243 in mitochondrial DNA. Phenotypic expression of MIDD includes Type 1-like and Type 2-like diabetes. This study examined whether HLA-DQ phenotype and the degree of heteroplasmy in leucocyte and oral mucosa DNA in¯uence clinical expression of the 3242 mutation. Methods In a group of 20 unrelated probands with MIDD, eight with Type 1- like diabetes, 12 with Type 2-like diabetes, HLA-DQ type and degree of heteroplasmy for the 3243 mutation were determined. HLA-DQA1/DQB1 phenotypes were categorized as predisposing, neutral or protective for autoimmune-mediated Type 1 diabetes. Results No differences were observed between Type 1 and Type 2-like MIDD groups with respect to the cumulative frequency of protective and predisposing HLA-DQ types. Predisposing HLA-DQ types are more prevalent in MIDD patients than in the control population (P < 0.05). Degrees of heteroplasmy for the 3243 mutation showed large variations in patients, ranging from 1 to 52% in leucocyte DNA. A strong correlation was seen between heteroplasmy in leucocyte DNA and DNA from oral mucosa cells (r = 0.89, P < 0.001). No correlation was observed between the degree of heteroplasmy and diabetic phenotype, even when group size was extended with diabetic relatives of patients with MIDD. The age of diagnosis of diabetes was not correlated with heteroplasmy, but the degree of heteroplasmy tended to decrease with age. Conclusions The phenotype of diabetes in MIDD appears to be independent of HLA-DQ phenotype and degree of heteroplasmy in leucocyte and oral mucosa DNA indicating that other, as yet unknown, factors modulate clinical expression of the 3243 mutation. Diabet. Med. 17, 841±847 (2000) Keywords autoimmunity, genetics, HLA, maternally inherited diabetes and deafness, mitochondria, Type 1 diabetes mellitus, Type 2 diabetes mellitus *Department of Metabolic Diseases and Endocrinology, Leiden University Medical Centre, Leiden, The Netherlands ²Department of Immunohematology and Blood Bank, Leiden University Medical Centre, The Netherlands ³Department of Molecular Cellbiology, Sylvius Laboratories, Leiden, The Netherlands Accepted 31 July 2000 Correspondence to: Dr Einar H. R. van Essen, Department of Metabolic Diseases and Endocrinology, Leiden University Medical Centre,Floor C4-R, Albinusdreef 2, P.O.Box 9600, 2300 RC Leiden, The Netherlands. E-mail: ehrvessen@LUMC.nl ã 2000 Diabetes UK. Diabetic Medicine, 17, 841±847 841