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Chapter 14
DOI: 10.4018/978-1-5225-2607-0.ch014
ABSTRACT
Pathway information for cancer detection helps to fnd co-regulated gene groups whose collective expres-
sion is strongly associated with cancer development. In this paper, a collaborative multi-swarm binary
particle swarm optimization (MS-BPSO) based gene selection technique is proposed that outperforms
to identify the pathway marker genes. We have compared our proposed method with various statistical
and pathway based gene selection techniques for diferent popular cancer datasets as well as a detailed
comparative study is illustrated using diferent meta-heuristic algorithms like binary coded particle
swarm optimization (BPSO), binary coded diferential evolution (BDE), binary coded artifcial bee
colony (BABC) and genetic algorithm (GA). Experimental results show that the proposed MS-BPSO
based method performs signifcantly better and the improved multi swarm concept generates a good
subset of pathway markers which provides more efective insight to the gene-disease association with
high accuracy and reliability.
INTRODUCTION
Genes control the different functioning of a cell, like growth, division, death etc. When the normal
profile of a gene is changed or damaged, it causes the abnormal behavior of the cell and we, in generic
sense, call it as cancer. Cancer is nothing but out-of-control cell growth due to change in the expression
profile of genes. Advancement of microarray technology has made the genomic study more fast and
Selection of Pathway
Markers for Cancer Using
Collaborative Binary Multi-
Swarm Optimization
Prativa Agarwalla
Heritage Institute of Technology, India
Sumitra Mukhopadhyay
Institute of Radiophysics and Electronics, India