LINK TO ORIGINAL ARTICLE
Payne et al. recently reported an excellent
overview of a target-based approach to new
antibacterial development and the lack of
new antibacterial drugs in late-stage develop-
ment several years ago
1
. This observation
has also been made by the participants in
the recent forum
2
of anti-infective research
and development. Also, the Infectious
Diseases Society of America recently identi-
fied six top-priority dangerous pathogens
— extended-spectrum β-lactamase (ESBL)-
producing Enterobacteriaceae, Acinetobacter
baumannii, Pseudomonas aeruginosa, vanco-
mycin-resistant Enterococcus faecium,
methicillin-resistant Staphylococcus aureus
and Aspergillus species — for which there are
few or no drugs in late-stage development.
This could further limit future safe and
effective choices for treating these infections
3
.
Three of these six pathogens are anti-
biotic-resistant Gram-negative bacteria.
Recently, antibacterial drugs against ESBL-
producing Gram-negative bacteria accounted
for ~15% (2 out of 13) of all antibacterial
drugs undergoing development in Phase II
trials or later clinical studies
3
. However, there
are no drugs being developed against class
C ESBL-producing Gram-negative bacteria.
Here, we draw attention to important aspects
of urgently needed antibacterial drugs against
class C ESBL-producing Gram-negative bac-
teria, which have been overlooked by these
reports. We also suggest that the category of
ESBLs should be expanded.
ESBLs are a group of enzymes for which
the substrate spectrum has extended to
third-generation oxyimino-cephalosporins
(for example, cefotaxime and ceftazidime)
4
.
Most of the known ESBLs are class A and D
β-lactamases, but recently, several class C
ESBLs were reported in Gram-negative bac-
teria: KL
5
, HD
6
, CMY-10 (REF. 7) and CMY-19
(REF. 8). The hydrolytic efficiency (k
cat
/K
m
)
of class C ESBLs for ceftazidime was higher
than or similar to that (0.029 µM
–1
s
–1
)
of SHV-38 (SHV stands for sulphydryl
variable)
9
, a typical class A ESBL.
Most of the class C β-lactamases have
hydrolysing activity against cephamycins
(that is, second-generation cephalosporins:
cefoxitin and cefotetan), which are not
hydrolysed by class A or D ESBLs
4–8
.
Cefepime (a fourth-generation oxyimino-
cephalosporin) was also inactivated by KL,
HD and CMY-19 ESBLs
5,6,8
. Rubinstein
and Zhanel have noted that physicians are
increasingly being forced to use the carbap-
enems (for example, imipenem or mero-
penem) and fluoroquinolones (for example,
ciprofloxacin or levofloxacin) as first-line
therapy for ESBL-producing Gram-negative
bacteria; indeed, the situation will become
even more severe as ESBL-producing organ-
isms increasingly become concomitantly
resistant to the fluoroquinolones
2
.
However, we recently found that the
CMY-10 ESBL had higher imipenem-
hydrolysing activity than OXA-23, a class D
carbapenemase
7,10
. Gram-negative bacteria
producing such class C ESBLs could present
a major therapeutic challenge, and so new
antibacterial drugs against class C ESBL-
producing Gram-negative bacteria are
urgently needed.
To develop these antibacterial drugs,
it is necessary to understand the operative
mechanism of class C ESBLs to extend their
substrate spectrum. Our kinetic data and
crystal structure
7
of a plasmid-encoded
class C ESBL (that is, CMY-10) clarify this
mechanism. The region responsible for
the extended substrate spectrum is the
R2-loop (amino-acid residues 289–307)
7
.
Our sequence alignment of four class C
ESBLs shows that the R2-loop includes
all regions responsible for the extended
substrate spectrum in all class C ESBLs, com-
pared with P99 (a class C non-ESBL) (FIG. 1):
• three amino-acid deletion (residues
303–305) of CMY-10 (REF. 7);
• four amino-acid deletion (residues
293–296) of HD
6
;
• the single amino-acid substitution
(L296H) of KL
5
;
• the single amino-acid substitution
(A292S) of CMY-19 (REF. 8).
These natural mutations in the R2-loop
can change the architecture of the active
site in class C ESBLs, thereby affecting their
hydrolysing activity. Owing to the deletion
in CMY-10, for example, the R2-loop in
the R2 active site (that is, the region that
accommodates the R2 side-chain at C3 of
the β-lactam nucleus in oxyimino-cephalo-
sporins) displays noticeable structural
alterations. The shortened path of the
connection R2-loop between α10 and β11
induces the ~2.5 Å shift of α9 and α10 rela-
tive to the adjacent helix α11 in CMY-10
compared with both P99 (REF. 11) and GC1
(REF. 12) β-lactamases, thereby opening
the gap between α9–α10 and α11 (REF. 7).
Therefore, the bulky R2 side-chain of oxy-
imino-cephalosporins could fit snugly into
the significant widening of the R2 active site
in this way.
Clinically available β-lactamase inhibi-
tors (for example, clavulanic acid, sulbactam
or tazobactam) co-administered with less
A lack of drugs for antibiotic-
resistant Gram-negative bacteria
Jung Hun Lee, Seok Hoon Jeong, Sun-Shin Cha and Sang Hee Lee
Figure 1 | A sequence alignment of amino-acid residues near the H-9
(α9) and H-10 (α10) helix of class C β-lactamases with extended
substrate spectrum. Alignment among CMY-10 and P99 β-lactamases for
which structures are available is performed based on their superimposed
structures. The image above the sequence alignment indicates secondary
structure annotation of CMY-10. A partial amino-acid sequence alignment
of CMY-10 (Enterobacter aerogenes K9911729; GenBank accession no.
AF357598; PDB code, 1ZKJ); CMY-19 (Klebsiella pneumoniae HKY466;
GenBank accession no. AB194410); HD (Serratia marcescens HD; GenBank
accession no. AY336102), KL (Escherichia coli KL; GenBank accession no.
AY533244); and P99 (Enterobacter cloacae P99; GenBank accession no.
X07274; PDB code, 2BLT) is shown. The R2-loop of residues 289–307 is
shaded. CMY-10, CMY-19, HD and KL are class C extended-spectrum
β-lactamases (ESBLs), whereas P99 is a class C non-ESBL.
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