Pharmacovigilance and Clinical
Environment: Utilizing OMOP-CDM and
OHDSI Software Stack to Integrate EHR
Data
Vlasios K. DIMITRIADIS
a
,George I. GAVRIILIDIS
a
and Pantelis NATSIAVAS
a,1
a
Institute of Applied Biosciences, Centre for Research & Technology Hellas, Thermi,
Thessaloniki, Greece
Abstract. Information Technology (IT) and specialized systems could have a
prominent role towards the support of drug safety processes, both in the clinical
context but also beyond that. PVClinical project aims to build an IT platform,
enabling the investigation of potential Adverse Drug Reactions (ADRs). In this
paper, we outline the utilization of Observational Medical Outcomes Partnership -
Common Data Model (OMOP-CDM) and the openly available Observational
Health Data Sciences and Informatics (OHDSI) software stack as part of
PVClinical platform. OMOP-CDM offers the capacity to integrate data from
Electronic Health Records (EHRs) (e.g., encounters, patients, providers, diagnoses,
drugs, measurements and procedures) via an accepted data model. Furthermore,
the OHDSI software stack provides valuable analytics tools which could be used
to address important questions regarding drug safety quickly and efficiently,
enabling the investigation of potential ADRs in the clinical environment.
Keywords. Pharmacovigilance, Drug Safety, OMOP-CDM, Electronic Health
Records, Adverse Drug Reactions
1. Introduction
Adverse Drug Reactions (ADRs) represent a peril to public health. ADRs are among
the most common causes of morbidity and mortality worldwide causing dismal patient
outcomes in the clinical setting, severe hurdles in the development and authorization of
novel therapeutics as well as significant economic burdens to public healthcare
providers [1]. To this end, Pharmacovigilance (PV) is defined as the science focusing
on the detection, assessment, understanding and prevention of ADRs [2].
Traditional approaches for PV “signals” (potential new or partially documented
ADRs) detection, entail the investigation of Individual Case Safety Reports (ICSRs)
via Spontaneous Reporting Systems (SRSs), based on “Disproportionality Analysis”
1
Corresponding author: Pantelis Natsiavas, Institute of Applied Biosciences Centre for Research and
Technology Hellas, 6th Km. Charilaou – Thermi Road, P.O. BOX 60361 GR – 57001, Thermi, Thessaloniki,
Greece, +30 2311257608; Email: pnatsiavas@certh.gr
Public Health and Informatics
J. Mantas et al. (Eds.)
© 2021 European Federation for Medical Informatics (EFMI) and IOS Press.
This article is published online with Open Access by IOS Press and distributed under the terms
of the Creative Commons Attribution Non-Commercial License 4.0 (CC BY-NC 4.0).
doi:10.3233/SHTI210232
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