Coordination Chemistry Reviews 249 (2005) 197–208
Review
Atomic resolution crystallography and XAFS
Richard W. Strange
∗
, Mark Ellis, S. Samar Hasnain
CCLRC Daresbury Laboratory, Molecular Biophysics Group and North West Structural Genomics Centre, Warrington, Cheshire WA4 4AD, UK
Received 1 October 2003; accepted 12 March 2004
Available online 6 August 2004
Contents
Abstract ................................................................................................................................ 197
1. Introduction ......................................................................................................................... 197
2. Why metalloproteins? ................................................................................................................. 198
3. XAFS and crystallographic resolution .................................................................................................. 198
4. Benefits of atomic resolution crystallography ............................................................................................ 200
5. 3D-EXAFS and medium resolution crystallography: improvement to atomic resolution accuracy ............................................. 203
6. Conclusions and future directions ...................................................................................................... 206
References ............................................................................................................................. 207
Abstract
This review discusses the relationship between protein crystallography and X-ray absorption spectroscopy when applied to metalloproteins.
The complementary nature of these two structural techniques is highlighted using recent examples. The importance of obtaining atomic
resolution protein crystal data and the use of cryo-annealing are made clear, and the advantages of using the atomic resolution data in
combination with X-ray absorption data are emphasised.
© 2004 Elsevier B.V. All rights reserved.
Keywords: EXAFS; Protein crystallography; Atomic resolution; Annealing; Metalloproteins
1. Introduction
Since the discovery of X-rays 100 years ago (Röntgen,
1895) the three-dimensional visualisation of matter has be-
come possible at a level where the detailed architecture of
even complex biological molecules can be understood. The
pioneering work of Perutz and Kendrew in the 1940s and
1950s set the foundation of protein crystallography (PX) as
a scientific activity whose success can only be described as
phenomenal in the last thirty years. There are several rea-
sons for this success but the availability of intense X-ray
beams from synchrotron radiation (SR) sources, combined
with powerful computers, has provided the major boost to
this technique. The intense X-rays from SR have also been
responsible for reviving another ‘old’ X-ray technique first
∗
Corresponding author. Tel.: +44-1925-60-3273;
fax: +44-1925-60-3748.
E-mail address: s.hasnain@dl.ac.uk (R.W. Strange).
URLs: http://www.srs.dl.ac.uk/mbg/, http://www.nwsgc.ac.uk/.
discussed in the 1920s—X-ray absorption fine structure
1
(XAFS). Unlike crystallography, this technique is able to
probe metal-containing proteins in both the aqueous and
crystalline states, even though the majority of applications
have been to the aqueous proteins. The technique provides
sub-atomic resolution (∼0.2 Å) information centred about
the metal centre in a metalloprotein. This information is lo-
calised to within a ∼5 Å sphere due to the short mean free
path of the X-ray generated photoelectron whose scattering
gives rise to the XAFS data. The full power of the technique
is achieved when it is combined with three-dimensional
structural data. This is usually available only from PX, which
provides the structural data at variable resolution, ranging
1
The term XAFS refers to the X-ray absorption process as a whole
and is normally divided into two regions: extended X-ray absorption fine
structure (EXAFS) and X-ray absorption near edge structure (XANES).
The EXAFS region provides the main information about distances, atom
types and coordination numbers, while XANES is sensitive to metal
oxidation state and coordination geometry.
0010-8545/$ – see front matter © 2004 Elsevier B.V. All rights reserved.
doi:10.1016/j.ccr.2004.03.019