The Use of Translational Research Platforms
in Clinical and Biomedical Data Exploration
Konstantina Skolariki and Antigoni Avramouli
Abstract The rise of precision medicine combined with the variety of biomedical
data sources and their heterogeneous nature make the integration and exploration of
information that they retain more complicated. In light of these issues, translational
research platforms were developed as a promising solution. Research centers have
used translational tools for the study of integrated data for hypothesis development
and validation, cohort discovery and data-exploration. For this article, we reviewed
the literature in order to determine the use of translational research platforms in
precision medicine. These tools are used to support scientists in various domains
regarding precision medicine research. We identified eight platforms: BRISK,
iCOD, iDASH, tranSMART, the recently developed OncDRS, as well as caTRIP,
cBio Cancer Portal and G-DOC. The last four platforms explore multidimensional
data specifically for cancer research. We focused on tranSMART, for it is the most
broadly used platform, since its development in 2012.
Keywords Precision medicine • Translational research platforms • Biomedical
research • Clinical data • High-throughput technologies
1 Introduction
The rise of personalized medicine and the generation of high-throughput data
has lead to an increasing need for sufficient translational research tools. We
identified eight platforms, that enable researchers to explore and analyze data. These
are: BRISK (Biology-Related Information Storage Kit), iCOD (integrated clinical
omics database), iDASH (integrating data for analysis, anonymization and sharing),
tranSMART, and OncDRS (Oncology Data Retrieval Systems). OncDRS is an
extended ‘Integrated Informatics from Biology to the Bedside’ (i2b2) project. There
K. Skolariki
University of Surrey, Guildford, Surrey, GU2 7XH, UK
e-mail: ks00430@surrey.ac.uk
A. Avramouli ()
Department of Informatics, Ionian University, Corfu 49100, Greece
e-mail: c15avra@ionio.gr
© Springer International Publishing AG 2017
P. Vlamos (ed.), GeNeDis 2016, Advances in Experimental Medicine
and Biology 988, DOI 10.1007/978-3-319-56246-9_25
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