Physica A 451 (2016) 533–540
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Physica A
journal homepage: www.elsevier.com/locate/physa
Open channel current noise analysis of S6 peptides from
KvAP channel on bilayer lipid membrane shows bimodal
power law scaling
Rajan Shrivastava
a,1
, Chetan Malik
b,1
, Subhendu Ghosh
a,c,*
a
Department of Biophysics, University of Delhi South Campus, New Delhi, 110021, India
b
Department of Life Science, School of Sciences, Indira Gandhi National Open University, New Delhi, 110068, India
c
Centre for Information Services and High Performance Computing (ZIH), Technical University Dresden, Germany
highlights
• Power spectral density (PSD) of S6 single-channel open current traces has been analysed.
• Bimodal slope of PSD (1/f and 1/f
2
) in ion channels has been reported.
• Two modes of non-equilibrium ion transport in S6 channel best describe the bimodal Power law scaling.
article info
Article history:
Received 2 September 2015
Received in revised form 17 December 2015
Available online 6 February 2016
Keywords:
Ion-channel
S6 peptide
Noise analysis
Brown noise
1/f noise
Bilayer electrophysiology
abstract
Open channel current noise in synthetic peptide S6 of KvAP channel was investigated in a
voltage clamp experiment on bilayer lipid membrane (BLM). It was observed that the power
spectral density (PSD) of the component frequencies follows power law with different
slopes in different frequency ranges. In order to know the origin of the slopes PSD analysis
was done with signal filtering. It was found that the first slope in the noise profile follows
1/f pattern which exists at lower frequencies and has high amplitude current noise, while
the second slope corresponds to 1/f
2-3
pattern which exists at higher frequencies with low
amplitude current noise. In addition, white noise was observed at very large frequencies. It
was concluded that the plausible reason for the multiple power-law scaling is the existence
of different modes of non-equilibrium ion transport through the S6 channel.
© 2016 Elsevier B.V. All rights reserved.
1. Introduction
Noise analysis is an important part of research in various fields, e.g. Physics, Geology, Environmental Sciences and
Biology [1–3]. In physiology, a number of reports related to noise have come up over the last several years [4]. In general,
Power law noise can be broadly classified into two categories, i.e. white noise (1/f
0
) and coloured noise (1/f
1-3
)[5]. The
origin and importance of various types of noise like 1/f
0
, 1/f , 1/f
2
and 1/f
3
, have been reported by many authors [6–12].
Especially, 1/f noise has been discussed extensively [7,13–16]. Bak et al. invoked Self Organized Criticality (SOC) to explain
1/f noise in sandpile avalanche [6–8]. He discussed the idea of criticality in phase transition of a dynamical system without
*
Corresponding author at: Department of Biophysics, University of Delhi South Campus, New Delhi, 110021, India. Tel.: +91 11 24113106x279; fax: +91
11 24115270.
E-mail address: profsubhendu@gmail.com (S. Ghosh).
1
Both the authors contributed equally to this work.
http://dx.doi.org/10.1016/j.physa.2016.01.079
0378-4371/© 2016 Elsevier B.V. All rights reserved.