SHORT COMMUNICATION
Genome sizes of three species in the subtribe Carabina
(Coleoptera: Carabidae)
Teiji SOTA
1
, Junji KONUMA
1
, Mayuki FUJIWARA
2
and Eiichi SHOGUCHI
2
1
Department of Zoology, Graduate School of Science, Kyoto University, Kyoto, Japan and
2
Marine Genomics Unit, Okinawa
Institute of Science and Technology Graduate University, Onna, Okinawa, Japan
Abstract
Genome sizes of three species in the subtribe Carabina (Coleoptera: Carabidae: tribe Carabini) were
estimated from nuclei of spermatozoa using a flow cytometry. The estimated haploid genome sizes were
about 330 megabases (Mb) for Damaster blaptoides, about 280 Mb for Carabus uenoi and about 260 Mb
for Carabus yamato.
Key words: Carabus uenoi, Carabus yamato, Damaster blaptoides, flow cytometry, spermatozoa.
Information of the genomic size of an individual organ-
ism is useful in many aspects of genetic and genomic
studies. The beetles of the subtribe Carabina (=Carabus
sensu lato; Deuve 2004) are an intriguing group for
various evolutionary studies (e.g., Sota & Nagata 2008;
Sasabe et al. 2010; Konuma et al. 2011), and the knowl-
edge of their genomic sizes is essential for analyzing
genetic basis of diverse traits. Here we estimated genome
sizes of three species in the subtribe Carabina, which are
particularly interesting for evolutionary studies.
Mature spermatozoa were collected from one male
beetle each of Damaster blaptoides fortunei (Adams)
from Awashima I., Niigata Pref., Japan (collected in July
2011 by J. Konuma), Carabus (Ohomopterus) uenoi
(Ishikawa) and C. (O.) yamato (Nakane) from Mt. Kon-
gosan, Osaka, Japan (collected in June 2011 by T. Sota).
The spermatozoa were used to estimate genome size.
Mature testes were removed from males and preserved
in a freezer at -28°C until sample preparation. After
melting, a testis was torn into pieces and crushed in
200–300 mL physiological saline with RNase using
forceps. The whole suspension was transferred to a
1.5-mL tube and vortexed for 10 s to liberate sperma-
tozoa from sperm bundles. Then the suspension was
filtered through 30-mm-diameter mesh nylon filter to
remove large particles other than spermatozoa.
The genome size analysis was conducted using a BD
FACSAria II cell sorter (Becton Dickinson, Franklin
Lakes, NJ, USA). A 50-mL aliquot of the above suspen-
sion was mixed with 100 mL phosphate buffered saline
containing 0.1% Tween 20 (PBST) and stirred in an
ultrasonicator for 10 s to dissociate attaching spermato-
zoa. The suspension was filtered through 35-mm-
diameter mesh nylon filter. A 50-mL suspension (2–4 ¥
10
4
cells/mL) was mixed with 1 mL NIM-DAPI
(#731085; Beckman Coulter, Brea, CA, USA) to stain
nuclei of spermatozoa and left at room temperature for
5 min. This sample was filtered through 35-mm-diameter
mesh nylon filter again and then analyzed by a BD
FACSAria II cell sorter using detector setting Violet-A
with the 407-nm violet laser to determine the fluorescent
intensity of a spermatozoa nucleus. For calibration,
spermatozoa of Takifugu rubripes (haploid genome size
of 365 megabase pairs (Mb)) were used as the size stan-
dard. Flow cytometry measurements were conducted for
both individual samples with and without the internal
standard (T. rubripes) mixed.
Flow cytometric measurement of each sample resulted
in peak fluorescent intensity of 3833 for D. blaptoides,
3315 for C. uenoi and 3087 for C. yamato (Fig. 1). Mea-
surements for mixed samples gave consistent results:
3831 for D. blaptoides, 3203 for C. uenoi and 2977 for
C. yamato (Fig. 1). Estimated genome sizes based on the
comparison with control haploid nuclei of T. rubripes
were 328 Mb for both measurements of D. blaptoides,
Correspondence: Teiji Sota, Department of Zoology,
Graduate School of Science, Kyoto University, Sakyo, Kyoto
606-8502, Japan.
Email: sota@terra.zool.kyoto-u.ac.jp
Received 21 May 2012; accepted 9 July 2012.
Entomological Science (2012) doi:10.1111/j.1479-8298.2012.00541.x
© 2012 The Entomological Society of Japan