Semiexperimental Equilibrium Structure of the Lower Energy
Conformer of Glycidol by the Mixed Estimation Method
Jean Demaison,*
,†
Norman C. Craig,*
,‡
Andrew R. Conrad,
§
Michael J. Tubergen,*
,§
and Heinz Dieter Rudolph*
,∥
†
Laboratoire de Physique des Lasers, Atomes et Molé cules, Universite ́ de Lille I, 59655 Villeneuve d’Ascq Cedex, France
‡
Department of Chemistry and Biochemistry, Oberlin College, Oberlin, Ohio 44074, United States
§
Kent State University, Kent, Ohio 44242, United States
∥
Department of Chemistry, University of Ulm, D-89069 Ulm, Germany
ABSTRACT: Rotational constants were determined for
18
O-substituted
isotopologues of the lower energy conformer of glycidol, which has an
intramolecular inner hydrogen bond from the hydroxyl group to the oxirane
ring oxygen. Rotational constants were previously determined for the
13
C and
the OD species. These rotational constants have been corrected with the
rovibrational constants calculated from an ab initio cubic force field. The
derived semiexperimental equilibrium rotational constants have been
supplemented by carefully chosen structural parameters, including those for
hydrogen atoms, from medium level ab initio calculations. The combined data
have been used in a weighted least-squares fit to determine an equilibrium
structure for the glycidol H-bond inner conformer. This work shows that the
mixed estimation method allows us to determine a complete and reliable
equilibrium structure for large molecules, even when the rotational constants of
a number of isotopologues are unavailable.
1. INTRODUCTION
Glycidol, or 2-oxiranemethanol, C
3
H
6
O
2
, is a chiral and
bifunctional compound with a great variety of uses.
1
The
molecule has internal hydrogen bonding expressed in two
different conformers. Determining an equilibrium structure for
this asymmetric 11 atom molecule from rotational constants for
only heavy atom substitution (plus OD) depends on new
methods.
The microwave spectrum of glycidol has been investigated
several times.
2−4
Two conformers were confirmed.
3
The lowest
energy conformer, called H-bond inner (see Figure 1), has an
internal hydrogen bond formed between the oxirane ring
oxygen atom and the hydroxyl group hydrogen atom from
above. This conformer is measured to have 3.6 kJ mol
−1
lower
energy than the H-bond outer conformer (see Figure 1),
3
which has an internal hydrogen bond formed between the
hydroxyl group hydrogen atom and the pseudo-π-electrons of
the oxirane ring. Recently, the microwave spectrum of the
glycidol−water complex was measured, and the rotational
constants of the
13
C isotopologues of glycidol were determined
as part of this study permitting the determination of a partial
substitution (r
s
) structure.
4
However, this structure for the
glycidol H-bond inner is inaccurate because several atoms of
this molecule have small Cartesian coordinates.
5
For a medium-sized molecule, such as glycidol, it is not
possible to obtain a structure good to 0.001 Å by midlevel
quantum chemical (QC) calculations. However, it is now
possible to reduce the errors in structures by using the
semiexperimental technique whereby equilibrium rotational
constants are derived from experimental ground state rotational
constants and rovibrational corrections derived from a quantum
chemical cubic force field.
6
Nonetheless, the Kraitchman’s
equations
7
used to determine the Cartesian coordinates of the
substituted atoms are quite sensitive to the remaining errors.
One way to, at least partially, obviate this difficulty is to use the
least-squares technique, which smoothes the errors. However,
the determined parameters will be affected by the uncertainty of
any fixed parameters. It is still better to use the mixed estimation
method where no parameters are fixed, but auxiliary
information is added directly to the data matrix for the least-
squares fit.
8,9
This auxiliary information, usually called predicate
observations, consists in carefully chosen values for the internal
coordinates of the unsubstituted atoms, together with their
corresponding uncertainties. This approach is relatively easy
because QC calculations at a medium level of theory permit
determining the internal coordinates of many light atoms with a
reasonable accuracy. These favorable predictions are partic-
ularly true for the hydrogen atoms. Furthermore, it is
advantageous, when possible, to also use predicate observations
for the substituted atoms in order to offset the possible harmful
Received: June 5, 2012
Revised: July 25, 2012
Published: August 15, 2012
Article
pubs.acs.org/JPCA
© 2012 American Chemical Society 9116 dx.doi.org/10.1021/jp305504x | J. Phys. Chem. A 2012, 116, 9116−9122