Effect of Preorganization on the Polymorphism and Cocrystallization
of a Squaramide Compound
Rafel Prohens,*
,†
Anna Portell,
†
and Xavier Alcobe ́
‡
†
Unitat de Polimorfisme i Calorimetria and
‡
Unitat de Difracció de Raigs X, Centres Científics i Tecnolò gics, Universitat de
Barcelona, Baldiri Reixac 10, 08028 Barcelona, Spain
* S Supporting Information
ABSTRACT: A squaramido-based model compound with the
ability to establish an intramolecular hydrogen bond has been
designed to study the effect of preorganization on its polymorphism
and the cocrystallization with resorcinol. Three out of the four
expected supramolecular synthons have been observed in two
polymorphs and two cocrystals with resorcinol, whose crystal
structures have been solved from X-ray diffraction laboratory data
using direct-space strategies.
■
INTRODUCTION
The attention that crystal engineering has received in the last
years is due mainly to the impact that novel crystalline materials
are having in fields such as supramolecular chemistry or
pharmaceutical sciences in terms of improved drug properties
and intellectual property.
1
The rational design of new
crystalline supramolecular structures has been traditionally
based on supramolecular synthons, which is a probabilistic
model that takes into account only the degree of occurrence of
a particular pattern of interaction.
2
Supramolecular synthons
can be defined as arrangements of intermolecular noncovalent
interactions with a highly occurring frequency in crystal
structures. This concept is applied in supramolecular synthesis
in such a manner as synthons are in covalent synthesis.
3
Therefore, a deep knowledge of the preference for a particular
synthon exhibited by a family of compounds can be used to
design new supramolecular crystalline materials. This strategy
has been applied successfully in numerous examples.
4
Recently we have experimentally and computationally
described the cooperative induction in self-assembled squar-
amides to explain the preference of this family of compounds
for chains versus ribbons in the solid state.
5
Moreover, this
phenomenon explains why this strong homosynthon has
resulted to be resistant against double donor H-bonding
compounds such as resorcinol. However, it is well-known that
the presence of competing H-bond donor/acceptors in the
same molecule can affect the resulting synthons in the crystal.
In this paper, we decided to study the effect that bringing an
intramolecular interaction by introducing an extra H-bond
acceptor can have over the resulting intermolecular synthons in
a bis squaramide-esther model compound, and in particular to
check the feasibility of breaking the omnipresent head-to-tail
synthons in squaramides through cocrystallization with H-
bonding donors.
■
EXPERIMENTAL SECTION
Materials. Diethylsquarate (98%) was purchased from Sigma-
Aldrich.
Synthesis of 1. Compound 1 was readily prepared from addition
of 1,4-bis(3-aminopropyl)piperazine (0.68 g, 3.4 mmol) dissolved in
diethyl ether (60 mL) to a solution of diethylsquarate (1.72 g, 10.1
mmol) (Sigma Aldrich) in diethyl ether (10 mL). The amine was
added dropwise during 3 h, under argon atmosphere, and it was stirred
overnight. A white solid precipitated immediately. The solid was
filtered and washed with diethyl ether (3 × 10 mL), and it yielded
87%.
6 1
H-NMR (CDCl
3
, 400 MHz) δ: 8.21 (br, 1H), 8.01 (br, 1H),
7.94 (br, 1H), 7.75 (br, 1H), 4.76 (q, 4H, J = 8 Hz), 3.82 (m, 2H),
3.60 (m, 2H), 2.61 (m, 12H), 1.79 (m, 4H), 1.46 (t, 6H, J = 8 Hz)
ppm.
13
C-NMR (CDCl
3
, 400 MHz) δ: 189.8, 182.2, 173.0, 69.6, 57.7,
53.1, 45.7, 25.1, 16.1 ppm. MS (TOF) m/z (%): (M - I
+
) 449.
X-ray Powder Diffraction. Laboratory X-ray powder diffraction
data for the solids obtained were collected at ambient temperature in a
Panalytical X’Pert PRO MPD capillary configuration (0.7 mm
diameter capillary); focusing elliptic mirror; Cu Kα1,2, λ = 1.5418
Å; 0.01 radians Soller slits; PIXcel detector, active length 3.347°;2θ
range, 2°-70°, step size, 0.013°, data collection time, 60 h. After
indexing using DICVOL04
7
and space group assignment, the structure
was solved using the program FOX,
8
followed by Rietveld refinement
using FullProf.
9
Differential Scanning Calorimetry (DSC). Experiments to define
the multiphase system were performed in a Mettler-Toledo DSC-822e
calorimeter. The samples were placed in aluminum crucibles of 40 μL
Received: May 29, 2012
Revised: July 20, 2012
Published: July 23, 2012
Article
pubs.acs.org/crystal
© 2012 American Chemical Society 4548 dx.doi.org/10.1021/cg300727r | Cryst. Growth Des. 2012, 12, 4548-4553