TAXONOGENOMICS: GENOME OF A KNOWN ORGANISM
Lactimicrobium massiliense gen. nov., sp. nov.; Anaerolactibacter massiliensis
gen. nov., sp. nov.; Galactobacillus timonensis gen. nov., sp. nov. and
Acidipropionibacterium timonense sp. nov. isolated from breast milk from
healthy breastfeeding African women
A. H. Togo
1,2
, A. Diop
1,2
, A. Camara
1,2
, E. Kuete
1,2
, S. Konate
1,2
, V. Brevaut
3
, C. Des Robert
4
, J. Delerce
1,2
, N. Armstrong
1,2
,
Y. Roussel
1,2
, P.-E. Fournier
1,2
, M. A. Thera
5
, D. Raoult
1,2
and M. Million
1,2
1) Aix Marseille Univ, IRD, AP-HM, MEPHI, 2) IHU-Méditerranée Infection, 3) APHM, CHU Hôpital Nord, Service de médecine néonatale, 4) APHM, CHU
Hôpital de la Conception, Service de médecine néonatale, F-13385, Marseille, France and 5) Malaria Research and Training Center, Department of Epidemiology
of Parasitic Diseases, FMOS-FAPH, University of Science, Techniques and Technologies, Bamako, Mali
Abstract
Four strains isolated by microbial culturomics from breast milk of healthy mothers from Mali were not identified and characterized by
taxono-genomics. This led us to propose the new genera and species Lactimicrobium massiliense, Anaerolactibacter massiliensis and
Galactobacillus timonensis containing type strain Marseille-P4301
T
(CSUR P4301
T
), Marseille-P4302
T
(CSUR P4302
T
) and Marseille-P4641
T
(CSUR P4641
T
), respectively. The strain Marseille-P4482 represents a novel species, Acidipropionibacterium timonense, in a previously
known genus with type strain being Marseille-P4482
T
(CSUR P4482
T
).
© 2019 Published by Elsevier Ltd.
Keywords: Culturomics, human breast milk, microbiome, microbiota, taxono-genomics
Original Submission: 22 February 2019; Revised Submission: 15 March 2019; Accepted: 18 March 2019
Article published online: 23 March 2019
Corresponding author: M. Million, Aix Marseille Université, Insti-
tut Hospitalier Universitaire Méditerranée-Infection, 19-21 Boulevard
Jean Moulin, 13005, Marseille, France.
E-mail: matthieumillion@gmail.com
Introduction
Human breast milk is a complex biological fluid produced by the
mammary glands. Breast milk not only provides the essential
nutrients for growth and development in new-borns, it also
protects against different infectious diseases [1 – 5]. Several
studies have reported unsuspected diversity, including many
bacteria that promote maternal and child health in breast,
colostrum and milk [6 – 9]. The breast-milk microbiota plays a
key role in the colonization of the new-born’s digestive tract
and in the development of its immunity [10 – 12]. However,
little is known about the composition of the human milk
microbiota, and most published studies are limited by the use of
metagenomics which does not differentiate between the DNA
sequences of live bacteria and dead bacteria [13 – 16]. To date,
to our knowledge, only one bacterial species, Streptococcus
lactarius, has been officially described with breast milk as the
first source of isolation [17]. This suggests that the human milk
microbiota is neglected and remains largely unexplored.
We have therefore studied the microbiota of colostrum and
breast milk of healthy mothers from France and Mali using the
culturomics approach, an approach developed and applied in
our laboratory over the past 10 years [18] to decipher the
bacterial diversity of colostrum and breast milk. As part of this
work, we isolated four new bacterial species from breast milk.
Here, we describe the isolation and taxonogenomic char-
acterization of strain Marseille-P-4301
T
, strain Marseille-P4302
T
and strain Marseille-P4641
T
as type strains of Lactimicrobium
massiliense gen. nov., sp. nov. (CSUR 4301), Anaerolactibacter
massiliensis gen. nov., sp. nov. (CSUR 4302) and Galactobacillus
New Microbe and New Infect 2019; 29: 100537
© 2019 Published by Elsevier Ltd
This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/)
https://doi.org/10.1016/j.nmni.2019.100537