Synthesis, structural, hirshfeld surface, spectroscopic studies and
quantum chemical calculation of the proton transfer complex between
2-amino-4-hydroxy-6-methylpyrimidine and salicylic acid
Ziya Afroz
a
, Mohd Faizan
b
, Mohammad Jane Alam
b
, Vítor Hugo Nunes Rodrigues
c
,
Shabbir Ahmad
b
, Afaq Ahmad
a, *
a
Department of Chemistry, Aligarh Muslim University, Aligarh, 202002, UP, India
b
Department of Physics, Aligarh Muslim University, Aligarh, 202002, UP, India
c
CFisUC, Department of Physics, Universidade de Coimbra, Rua Larga, 3004-516, Coimbra, Portugal
article info
Article history:
Received 13 March 2018
Received in revised form
5 June 2018
Accepted 5 June 2018
Keywords:
PT complex
SCXRD
DFT calculation
2-Amino-4-hydroxy-6-methylpyridine and
salicylic acid
abstract
The proton transfer (PT) complex of 2-amino-4-hydroxy-6-methylpyrimidine (AHMP) with salicylic acid
(SA) has been synthesized and their crystal has been grown by slow evaporation technique. Further, the
crystal has been investigated by single crystal X-ray diffraction (SCXRD). The complex crystallizes in the
orthorhombic centrosymmetric space group Pbca. The vibrational spectra of PT complex and its con-
stituents have been analysed in the solid phase. UVeVis and
1
HNMR spectra of PT complex and its
constituents (SA and AHMP have been studied in solution phase. Thermal stability of PT complex has
been examined by thermal gravimetric and differential thermal analysis (TG/DTA). The intermolecular
interactions and their contribution to the crystal formation have been analysed with the help of 3D
Hirshfeld surface and 2D fingerprint plot. The theoretical calculations of the PT complex have been
carried out using DFT/TD-DFT methods to support the experimental results as well as to explore various
molecular properties such as frontier molecular orbitals, natural atomic charges, chemical reactivity and
molecular electrostatic potential mapping (MEP).
© 2018 Elsevier B.V. All rights reserved.
1. Introduction
PT complexes are gaining considerable interest in the research
from last decade, due to their wide potential applications in the
field of pharmaceutical science [1], material science [2], bio-
electrochemical energy transfer process [3], biological science [4],
optoelectronic, optical communication [5,6], organic semi-
conductor [7], and DNA binding, antibacterial and antifungal ac-
tivity [8]. Pyrimidine and its derivatives are known for their
biological and pharmaceuticals importance. These are nitrogen-
containing heterocyclic compound and belong to nucleic acid
family [9, 10]. Pyrimidine derivatives have exhibited antibacterial,
antifungal and anti-HIV activity [11 , 12]. While, SA is widely used in
organic synthesis, plant growth regulator, as a preservative in food
products, antiseptic, anti-fungal agents [13, 14] and in the many skin
care product for acne treatment, psoriasis, calluses, corns, keratosis
pilaris and warts [15, 16]. These wide range importances of AHMP
and SA have motivated to synthesize their PT complex. Their single
crystal has been grown by slow evaporation technique and it was
investigated by SCXRD analysis. The PT complex was further
investigated by quantum chemical calculations (DFT/TD-DFT) and
various experimental techniques (FTIR, UVeVis,
1
H NMR, TG/DTA).
The characteristic absorption bands appeared in the FTIR of PT
complex have been assigned with great accuracy using animated
modes and simulated IR spectrum. SCXRD technique and FTIR,
1
H
NMR and UVeVis spectra are used to confirm the present PT
complex formation. Hirshfeld surface analysis is utilized to study
the contribution of the intermolecular interactions and void field
space in the crystal. Thermal behaviour of the studied crystal is
analysed by TG/DTA. Moreover, frontier molecular orbital energies,
electrostatic potential, natural atomic charge and reactivity
parameter have been discussed.
* Corresponding author.
E-mail addresses: afaqahmad3@gmail.com, zia19a@gmail.com (A. Ahmad).
Contents lists available at ScienceDirect
Journal of Molecular Structure
journal homepage: http://www.elsevier.com/locate/molstruc
https://doi.org/10.1016/j.molstruc.2018.06.020
0022-2860/© 2018 Elsevier B.V. All rights reserved.
Journal of Molecular Structure 1171 (2018) 438e448