© A.Yu. Ivanov, Yu.V. Rubin, S.A. Egupov, L.F. Belous, and V.A. Karachevtsev, 2013
Low Temperature Physics/Fizika Nizkikh Temperatur, 2013, v. 39, No. 6, pp. 704–711
Fermi resonance in Ne, Ar and Kr-matrix infrared spectra
of 5-bromouracil
A.Yu. Ivanov, Yu.V. Rubin, S.A. Egupov, L.F. Belous, and V.A. Karachevtsev
B. Verkin Institute for Low Temperature Physics and Engineering of the National Academy of Sciences of Ukraine
47 Lenin Ave., Kharkov 61103, Ukraine
E-mail: ivanov@ilt.kharkov.ua
Received December 21, 2012, revised February 13, 2013
Low-temperature matrix isolation Fourier-transform infrared spectroscopy and quantum-chemical calcula-
tions with DFT/B3LYP and MP2 methods were used for investigation of isolated 5-bromouracil (BrU) mole-
cules. Only one tautomeric form of BrU was dominated in the low-temperature Ne, Ar, and Kr matrices. It was
revealed that population of minor hydroxy-tautomers did not exceed 0.2%. Appearance of additional absorption
bands in the region of stretching vibrations CO (about 1710 cm
–1
) as well as of deformation ones (1297, 1093,
901 cm
–1
) was explained by Fermi resonance. In Ne matrices the peak intensities of absorption bands assigned to
the out-of-plane vibrations of the ring and exocyclic atoms were decreased sharply. For the first time, least
square method with the using of polynomial was proposed for the corrective scaling of calculated frequencies of
vibrations. It is shown that the correction of calculated frequencies with the polynomial of degree two permits to
decrease the root-mean-square discrepancy between the calculated and experimental ones to 4–5 cm
–1
in the re-
gion of 1500–500 cm
–1
. The same polynomial may be applied for the correction of spectra of molecules with a
similar structure.
PACS: 33.15.–e Properties of molecules;
33.20.–t Molecular spectra;
33.20.Ea Fourier transform spectra;
82.30.Qt Isomerization and rearrangement.
Keywords: FTIR spectroscopy, matrix isolation, DFT method, Fermi resonance.
1. Introduction
Modern science shows constant interest in studies of
biological molecules under conditions free of strong inter-
molecular interactions [1,2]. The low-temperature spectral
methods are the basis of this scientific direction [1–5].
Low-temperatures permit to freeze separate isomers of
biological molecules and their complexes in the inert sur-
rounding and to model biological processes in the space
[6]. Besides, absent of molecule rotation in the inert medi-
um permits essential improve of the resolution of vibra-
tional spectra. Owing to this, the low-temperature matrix
isolation infrared spectroscopy revealed self-descriptive-
ness technique during studies on tautomerism of deoxyri-
bonucleic acid (DNA) bases and of their biologically ac-
tive derivatives [7]. Such biologically active molecules as
halogen-substituted DNA bases and nucleosides have a vi-
tal part in the various biological processes [8]. For example,
5-haloderivatives of uracil are able to replace thymine in
DNA [8,9], have increased mutagenic activity [8,10] and
increase DNA sensitivity to ionizing radiation [11]. Some
works were devoted to studies of vibrational spectra of 5-bro-
mouracil (BrU ) molecules isolated in Ar matrices [12–14].
On the basis of these spectra, conclusions have been made
on BrU flat structure [12] and on Fermi resonance in the
region of CO stretching vibrations [13,14]. As well, the
conclusion on the predominance of the tautomeric structure
of BrU_0 was drawn (Fig. 1).
However, in spite of the predominance BrU_0 tauto-
mer, the number of absorption bands in the experimental
vibrational spectra of BrU exceeds noticeably theoretically
possible 3N-6 fundamental vibrations. Also, quantitative
data on BrU tautomeric equilibrium and on low-intensity
spectral bands in the deformation range of 1500–500 cm
–1
were absent. Meanwhile, analysis of the uracil spectra reveals
Fermi resonance in this spectral region (1550–500 cm
–1
)
too [15]. Besides, spectra of BrU were obtained only for
Ar matrices, and this is able to complicate their analysis